Identification of the role of endoplasmic reticulum stress genes in endometrial cancer and their association with tumor immunity

T Zhang, Q Zhang, J Zhang, R Zhao, R Shi, S Wei… - BMC Medical …, 2023 - Springer
Background Endometrial cancer (EC) is one of the worldwide gynecological malignancies.
Endoplasmic reticulum (ER) stress is the cellular homeostasis disturbance that participates …

Genome-wide perturbations of A-to-I RNA editing dysregulated circular RNAs promoting the development of cervical cancer

Y Wang, J Zhao, J Wu, J Liu, Y Wang, T Xu… - Computers in Biology …, 2023 - Elsevier
Cervical cancer, the second most common female malignant tumor, seriously threatens
women's health and lives. Despite the availability of the HPV vaccine, effective treatment …

OCRFinder: a noise-tolerance machine learning method for accurately estimating open chromatin regions

J Ren, Y Liu, X Zhu, X Wang, Y Li, Y Liu, W Hu… - Frontiers in …, 2023 - frontiersin.org
Open chromatin regions are the genomic regions associated with basic cellular
physiological activities, while chromatin accessibility is reported to affect gene expressions …

TMBstable: a variant caller controls performance variation across heterogeneous sequencing samples

S Wang, X Zhu, X Wang, Y Liu, M Zhao… - Briefings in …, 2024 - academic.oup.com
In cancer genomics, variant calling has advanced, but traditional mean accuracy evaluations
are inadequate for biomarkers like tumor mutation burden, which vary significantly across …

DeepLION2: deep multi-instance contrastive learning framework enhancing the prediction of cancer-associated T cell receptors by attention strategy on motifs

X Qian, G Yang, F Li, X Zhang, X Zhu, X Lai… - Frontiers in …, 2024 - frontiersin.org
Introduction T cell receptor (TCR) repertoires provide valuable insights into complex human
diseases, including cancers. Recent advancements in immune sequencing technology have …

Development of a risk assessment model for cardiac injury in patients newly diagnosed with acute myeloid leukemia based on a multicenter, real-world analysis in …

L Ma, Q Wang, X Li, Y Shang, N Zhang, J Wu, Y Liang… - BMC cancer, 2024 - Springer
Background Studies have revealed that acute myeloid leukemia (AML) patients are prone to
combined cardiac injury. We aimed to identify hematological risk factors associated with …

A radiomics signature derived from CT imaging to predict MSI status and immunotherapy outcomes in gastric cancer: a multi-cohort study

P Zhan, S Yang, X Liu, Y Zhang, R Wang, J Wang… - BMC cancer, 2024 - Springer
Background Accurate microsatellite instability (MSI) testing is essential for identifying gastric
cancer (GC) patients eligible for immunotherapy. We aimed to develop and validate a CT …

An association between ATP7B expression and human cancer prognosis and immunotherapy: a pan-cancer perspective

Z Zhang, A Zhang, Y Shi, Z Zhao, Z Zhao - BMC Medical Genomics, 2023 - Springer
Background ATP7B is a copper-transporting protein that contributes to the chemo-resistance
of human cancer cells. It remains unclear what the molecular mechanisms behind ATP7B …

CYP19A1 promotes gastric cancer as part of a lipid metabolism-related gene signature related to the response of immunotherapy and prognosis

X Zhou, F Meng, L Xiao, H Shen - BMC Medical Genomics, 2023 - Springer
Background Increasing evidence suggests that the metabolism of lipids plays a crucial role
in the progression of gastric cancer. However, the expression of lipid metabolism-related …

A Statistical Explainable Learning Model Optimizing Co-localization of Multidimensional Positivity Thresholds in Immunotherapy Decision-Supporting

Y Wang, J Liu, J Zhao, J Wang… - … on Bioinformatics and …, 2023 - ieeexplore.ieee.org
Tumor Mutation Burden (TMB) serves as a recognized stratified biomarker for
immunotherapy. However, its one-dimensional representation of non-synonymous genetic …