[HTML][HTML] Genetics and genomics of SARS-CoV-2: A review of the literature with the special focus on genetic diversity and SARS-CoV-2 genome detection

A Rahimi, A Mirzazadeh, S Tavakolpour - Genomics, 2021 - Elsevier
The outbreak of 2019-novel coronavirus disease (COVID-19), caused by SARS-CoV-2,
started in late 2019; in a short time, it has spread rapidly all over the world. Although some …

High‐throughput metagenomics for identification of pathogens in the clinical settings

N Li, Q Cai, Q Miao, Z Song, Y Fang, B Hu - Small methods, 2021 - Wiley Online Library
The application of sequencing technology is shifting from research to clinical laboratories
owing to rapid technological developments and substantially reduced costs. However …

mNGS in clinical microbiology laboratories: on the road to maturity

D Han, Z Li, R Li, P Tan, R Zhang… - Critical reviews in …, 2019 - Taylor & Francis
Metagenomic next-generation sequencing (mNGS) is increasingly being applied in clinical
laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine …

The diagnostic value of metagenomic next–generation sequencing in lower respiratory tract infection

Y Zheng, X Qiu, T Wang, J Zhang - Frontiers in cellular and infection …, 2021 - frontiersin.org
Lower respiratory tract infections are associated with high morbidity and mortality and
significant clinical harm. Due to the limited ability of traditional pathogen detection methods …

Metagenomic analysis reveals clinical SARS-CoV-2 infection and bacterial or viral superinfection and colonization

V Peddu, RC Shean, H Xie, L Shrestha… - Clinical …, 2020 - academic.oup.com
Background More than 2 months separated the initial description of SARS-CoV-2 and
discovery of its widespread dissemination in the United States. Despite this lengthy interval …

Advantages and challenges of metagenomic sequencing for the diagnosis of pulmonary infectious diseases

Y Chen, LC Fan, YH Chai, JF Xu - The clinical respiratory …, 2022 - Wiley Online Library
Objective We aim to familiarize the application status of metagenomic sequencing in
diagnosing pulmonary infections, to compare metagenomic sequencing with traditional …

Human bocavirus respiratory infection: Tracing the path from viral replication and virus‐cell interactions to diagnostic methods

MB Colazo Salbetti, GA Boggio… - Reviews in Medical …, 2023 - Wiley Online Library
Human bocaviruses were first described between 2005 and 2010, identified in respiratory
and enteric tract samples of children. Screening studies have shown worldwide distribution …

RAPIDprep: A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples

RL Tulloch, K Kim, C Sikazwe, A Michie, R Burrell… - Viruses, 2023 - mdpi.com
Emerging infectious disease threats require rapid response tools to inform diagnostics,
treatment, and outbreak control. RNA-based metagenomics offers this; however, most …

Gemykibivirus Genome in Lower Respiratory Tract of Elderly Woman With Unexplained Acute Respiratory Distress Syndrome

J Wang, Y Li, X He, J Ma, W Hong, F Hu… - Clinical Infectious …, 2019 - academic.oup.com
Using metagenomics analysis, we are the first to identify the presence of a small, circular,
single-stranded Gemykibivirus (GkV) genome from the respiratory tract of an elderly woman …

Respiratory virus infections in hospitalized and non-hospitalized children: determinants of severe course of the disease

LF Costa, HL Da Silveira, DAO Queiróz… - The Journal of Infection …, 2022 - jidc.org
Introduction: Viral respiratory disease constitutes a great burden worldwide mainly among
children. Objective: One pursued to compare disease characteristics of children who …