Pattern recognition techniques for the emerging field of bioinformatics: A review

AWC Liew, H Yan, M Yang - Pattern Recognition, 2005 - Elsevier
The emerging field of bioinformatics has recently created much interest in the computer
science and engineering communities. With the wealth of sequence data in many public …

Milestones in graphical bioinformatics

M Randić, M Novič, D Plavšić - International Journal of …, 2013 - Wiley Online Library
After reviewing the field of graphical bioinformatics, we have selected two dozen of the most
significant publications that represent milestones of graphical bioinformatics. These …

[PDF][PDF] Mathematical descriptors of DNA sequences: development and applications

A Nandy, M Harle, SC Basak - Arkivoc, 2006 - academia.edu
Over the last few years several authors have presented various methods to assign
mathematical descriptors to DNA sequences in order to quantitatively compare the …

New 3D graphical representation of DNA sequence based on dual nucleotides

XQ Qi, J Wen, ZH Qi - Journal of Theoretical Biology, 2007 - Elsevier
We introduce a 3D graphical representation of DNA sequences based on the pairs of dual
nucleotides (DNs). Based on this representation, we consider some mathematical invariants …

TN curve: a novel 3D graphical representation of DNA sequence based on trinucleotides and its applications

JF Yu, X Sun, JH Wang - Journal of theoretical biology, 2009 - Elsevier
In this paper, a novel 3D graphical representation of DNA sequence based on trinucleotides
is proposed. This representation allows direct inspection of composition as well as …

PN-curve: A 3D graphical representation of DNA sequences and their numerical characterization

ZH Qi, TR Fan - Chemical Physics Letters, 2007 - Elsevier
We consider a novel 3D graphical representation of DNA sequences based on the pairs of
nucleotides (PNs). The model avoids loss of information accompanying alternative 3D …

PNN-curve: A new 2D graphical representation of DNA sequences and its application

XQ Liu, Q Dai, Z Xiu, T Wang - Journal of Theoretical Biology, 2006 - Elsevier
We introduce a novel 2D graphical representation of DNA sequences based on the pairs of
the neighboring nucleotides (PNNs). Then we get the PNNs' distributions and obtain a yM …

DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences

ZJ Zhang - Bioinformatics, 2009 - academic.oup.com
Motivation: The rapid growth of DNA sequence data creates a need to find graphic tools to
study DNA sequence in a perceivable form. A large number of scholars work hard in this …

3D graphical representation of protein sequences and their statistical characterization

MIA el Maaty, MM Abo-Elkhier… - Physica A: Statistical …, 2010 - Elsevier
Based on three physicochemical properties of amino acid side chains, we proposed a novel
unique 3D graphical representation of protein sequences. Then, we constructed two vectors …

A new 2D graphical representation—Classification curve and the analysis of similarity/dissimilarity of DNA sequences

Y Yao, X Nan, T Wang - Journal of Molecular Structure: THEOCHEM, 2006 - Elsevier
Classification curve, a 2D graphical representation of DNA sequences is given in terms of
classifications of bases of nucleic acids. The new graphical representation can completely …