Towards systems metabolic engineering in Pichia pastoris

JP Schwarzhans, T Luttermann, M Geier… - Biotechnology …, 2017 - Elsevier
The methylotrophic yeast Pichia pastoris is firmly established as a host for the production of
recombinant proteins, frequently outperforming other heterologous hosts. Already, a …

Tying up loose ends: nonhomologous end-joining in Saccharomyces cerevisiae

LK Lewis, MA Resnick - Mutation Research/Fundamental and Molecular …, 2000 - Elsevier
The ends of chromosomal DNA double-strand breaks (DSBs) can be accurately rejoined by
at least two discrete pathways, homologous recombination and nonhomologous end-joining …

Functional interactions between BRCA1 and the checkpoint kinase ATR during genotoxic stress

RS Tibbetts, D Cortez, KM Brumbaugh… - Genes & …, 2000 - genesdev.cshlp.org
The BRCA1 gene encodes a tumor suppressor that is mutated in 50% of familial breast
cancers. The BRCA1 protein has been implicated in the DNA damage response, as DNA …

[HTML][HTML] Activation of Rad53 kinase in response to DNA damage and its effect in modulating phosphorylation of the lagging strand DNA polymerase

A Pellicioli, C Lucca, G Liberi, F Marini, M Lopes… - The EMBO …, 1999 - embopress.org
Abstract The Saccharomyces cerevisiae Rad53 protein kinase is required for the execution
of checkpoint arrest at multiple stages of the cell cycle. We found that Rad53 …

Template switching between the leading and lagging strands at replication forks generates inverted copy number variants through hairpin-capped extrachromosomal …

R Martin, CY Espinoza, CRL Large, J Rosswork… - Plos …, 2024 - journals.plos.org
Inherited and germ-line de novo copy number variants (CNVs) are increasingly found to be
correlated with human developmental and cancerous phenotypes. Several models for …

Repair of intermediate structures produced at DNA interstrand cross-links in Saccharomyces cerevisiae

PJ McHugh, WR Sones, JA Hartley - Molecular and cellular …, 2000 - Am Soc Microbiol
Bifunctional alkylating agents and other drugs which produce DNA interstrand cross-links
(ICLs) are among the most effective antitumor agents in clinical use. In contrast to agents …

Cell cycle regulation of homologous recombination in Saccharomyces cerevisiae

DP Mathiasen, M Lisby - FEMS microbiology reviews, 2014 - academic.oup.com
Homologous recombination (HR) contributes to maintaining genome integrity by facilitating
error-free repair of DNA double-strand breaks (DSBs) primarily during the S and G2 phases …

System-wide Analysis of SUMOylation Dynamics in Response to Replication Stress Reveals Novel Small Ubiquitin-like Modified Target Proteins and Acceptor Lysines …

Z Xiao, JG Chang, IA Hendriks, JO Sigurðsson… - Molecular & Cellular …, 2015 - ASBMB
Genotoxic agents can cause replication fork stalling in dividing cells because of DNA
lesions, eventually leading to replication fork collapse when the damage is not repaired …

Improved gene targeting through cell cycle synchronization

V Tsakraklides, E Brevnova, G Stephanopoulos… - PloS one, 2015 - journals.plos.org
Gene targeting is a challenge in organisms where non-homologous end-joining is the
predominant form of recombination. We show that cell division cycle synchronization can be …

Hydroxyurea and inactivation of checkpoint kinase MEC1 inhibit transcription termination and pre-mRNA cleavage at polyadenylation sites in budding yeast

P Kaur, S Nagar, R Mehta, K Sahadeo, A Vancura - Scientific Reports, 2023 - nature.com
The DNA damage response (DDR) is an evolutionarily conserved process essential for cell
survival. The transcription changes triggered by DDR depend on the nature of DNA damage …