Network pharmacology of cancer: From understanding of complex interactomes to the design of multi-target specific therapeutics from nature

P Poornima, JD Kumar, Q Zhao, M Blunder… - Pharmacological …, 2016 - Elsevier
Despite massive investments in drug research and development, the significant decline in
the number of new drugs approved or translated to clinical use raises the question, whether …

SLNL: a novel method for gene selection and phenotype classification

HH Huang, NQ Wu, Y Liang… - International Journal of …, 2022 - Wiley Online Library
One of the central tasks of genome research is to predict phenotypes and discover some
important gene biomarkers. However, there are three main problems in analyzing genomics …

A hybrid genetic algorithm with wrapper-embedded approaches for feature selection

XY Liu, Y Liang, S Wang, ZY Yang, HS Ye - IEEE Access, 2018 - ieeexplore.ieee.org
Feature selection is an important research area for big data analysis. In recent years, various
feature selection approaches have been developed, which can be divided into four …

Recent advances on penalized regression models for biological data

P Wang, S Chen, S Yang - Mathematics, 2022 - mdpi.com
Increasingly amounts of biological data promote the development of various penalized
regression models. This review discusses the recent advances in both linear and logistic …

LncRNA LUCAT1 facilitates tumorigenesis and metastasis of triple-negative breast cancer through modulating miR-5702

E Mou, H Wang - Bioscience reports, 2019 - portlandpress.com
Triple-negative breast cancer (TNBC) is a subtype of aggressive breast cancer with high
recurrence and poor survival. Emerging evidence has indicated that long non-coding RNAs …

Feature Selection and Cancer Classification via Sparse Logistic Regression with the Hybrid L1/2 +2 Regularization

HH Huang, XY Liu, Y Liang - PloS one, 2016 - journals.plos.org
Cancer classification and feature (gene) selection plays an important role in knowledge
discovery in genomic data. Although logistic regression is one of the most popular …

MUMA: A multi-omics meta-learning algorithm for data interpretation and classification

HH Huang, J Shu, Y Liang - IEEE Journal of Biomedical and …, 2024 - ieeexplore.ieee.org
Multi-omics data integration is a promising field combining various types of omics data, such
as genomics, transcriptomics, and proteomics, to comprehensively understand the …

A connected network-regularized logistic regression model for feature selection

L Li, ZP Liu - Applied Intelligence, 2022 - Springer
Feature selection on a network structure can not only discover interesting variables but also
mine out their intricate interactions. Regularization is often employed to ensure the sparsity …

[HTML][HTML] Artificial neural network approach to predict surgical site infection after free-flap reconstruction in patients receiving surgery for head and neck cancer

PJ Kuo, SC Wu, PC Chien, SS Chang, CS Rau… - Oncotarget, 2018 - ncbi.nlm.nih.gov
Background The aim of this study was to develop an effective surgical site infection (SSI)
prediction model in patients receiving free-flap reconstruction after surgery for head and …

[HTML][HTML] A novel ferroptosis-related gene signature for prognostic prediction of patients with lung adenocarcinoma

J Jin, C Liu, S Yu, L Cai, A Sitrakiniaina, R Gu… - Aging (Albany …, 2021 - ncbi.nlm.nih.gov
Background: Lung adenocarcinoma (LUAD) is a heterogeneous disease characterized by
high mortality and poor prognosis. Ferroptosis, a newly discovered iron-dependent type of …