Structure, assembly, and function of tripartite efflux and type 1 secretion systems in gram-negative bacteria

I Alav, J Kobylka, MS Kuth, KM Pos, M Picard… - Chemical …, 2021 - ACS Publications
Tripartite efflux pumps and the related type 1 secretion systems (T1SSs) in Gram-negative
organisms are diverse in function, energization, and structural organization. They form …

The current trends of bioethanol production from cheese whey using yeasts: biological and economical perspectives

A Tesfaw - Frontiers in Energy Research, 2023 - frontiersin.org
Besides organic compounds such as lactose and proteins, cheese whey is rich in other
nutrients. Damping of these valuable compounds to the environment, first, harms the …

[HTML][HTML] Expansion of the Major Facilitator Superfamily (MFS) to include novel transporters as well as transmembrane-acting enzymes

SC Wang, P Davejan, KJ Hendargo… - … et Biophysica Acta (BBA …, 2020 - Elsevier
Abstract The Major Facilitator Superfamily (MFS) is currently the largest characterized
superfamily of transmembrane secondary transport proteins. Its diverse members are found …

Computation and functional studies provide a model for the structure of the zinc transporter hZIP4

S Antala, S Ovchinnikov, H Kamisetty, D Baker… - Journal of Biological …, 2015 - ASBMB
Members of the Zrt and Irt protein (ZIP) family are a central participant in transition metal
homeostasis as they function to increase the cytosolic concentration of zinc and/or iron …

Bioinformatic characterization of the Anoctamin Superfamily of Ca2+-activated ion channels and lipid scramblases

A Medrano-Soto, G Moreno-Hagelsieb, D McLaughlin… - PloS one, 2018 - journals.plos.org
Our laboratory has developed bioinformatic strategies for identifying distant phylogenetic
relationships and characterizing families and superfamilies of transport proteins. Results …

A numbering system for MFS transporter proteins

J Lee, ZA Sands, PC Biggin - Frontiers in molecular biosciences, 2016 - frontiersin.org
The Major Facilitator Superfamily (MFS) is one of the largest classes of secondary active
transporters and is widely expressed in many domains of life. It is characterized by a …

Topology of membrane proteins—predictions, limitations and variations

KD Tsirigos, S Govindarajan, C Bassot… - Current opinion in …, 2018 - Elsevier
Transmembrane proteins perform a variety of important biological functions necessary for
the survival and growth of the cells. Membrane proteins are built up by transmembrane …

[HTML][HTML] The redox-sensing MarR-type repressor HypS controls hypochlorite and antimicrobial resistance in Mycobacterium smegmatis

QN Tung, T Busche, V Van Loi, J Kalinowski… - Free Radical Biology …, 2020 - Elsevier
MarR-family transcription factors often control antioxidant enzymes, multidrug efflux pumps
or virulence factors in bacterial pathogens and confer resistance towards oxidative stress …

Completeness and consistency in structural domain classifications

RD Schaeffer, LN Kinch, J Pei, KE Medvedev… - ACS …, 2021 - ACS Publications
Domain classifications are a useful resource for computational analysis of the protein
structure, but elements of their composition are often opaque to potential users. We perform …

Function, structure, and evolution of the major facilitator superfamily: The LacY manifesto

MG Madej - Advances in Biology, 2014 - Wiley Online Library
The major facilitator superfamily (MFS) is a diverse group of secondary transporters with
members found in all kingdoms of life. A paradigm for MFS is the lactose permease (LacY) of …