Network motifs: theory and experimental approaches

U Alon - Nature Reviews Genetics, 2007 - nature.com
Transcription regulation networks control the expression of genes. The transcription
networks of well-studied microorganisms appear to be made up of a small set of recurring …

[图书][B] An introduction to systems biology: design principles of biological circuits

U Alon - 2019 - api.taylorfrancis.com
Praise for the first edition:… superb, beautifully written and organized work that takes an
engineering approach to systems biology. Alon provides nicely written appendices to …

Building blocks of biological networks: a review on major network motif discovery algorithms

A Masoudi-Nejad, F Schreiber, ZRM Kashani - IET systems biology, 2012 - IET
In recent years, there has been a great interest in studying different aspects of complex
networks in a range of fields. One important local property of networks is network motifs …

FANMOD: a tool for fast network motif detection

S Wernicke, F Rasche - Bioinformatics, 2006 - academic.oup.com
Motifs are small connected subnetworks that a network displays in significantly higher
frequencies than would be expected for a random network. They have recently gathered …

Superfamily phenomena and motifs of networks induced from time series

X Xu, J Zhang, M Small - Proceedings of the National …, 2008 - National Acad Sciences
We introduce a transformation from time series to complex networks and then study the
relative frequency of different subgraphs within that network. The distribution of subgraphs …

Efficient detection of network motifs

S Wernicke - IEEE/ACM transactions on computational biology …, 2006 - ieeexplore.ieee.org
Motifs in a given network are small connected subnetworks that occur in significantly higher
frequencies than would be expected in random networks. They have recently gathered …

Analysis of a large-scale weighted network of one-to-one human communication

JP Onnela, J Saramäki, J Hyvönen, G Szabó… - New journal of …, 2007 - iopscience.iop.org
We construct a connected network of 3.9 million nodes from mobile phone call records,
which can be regarded as a proxy for the underlying human communication network at the …

On the uniform generation of random graphs with prescribed degree sequences

R Milo, N Kashtan, S Itzkovitz, MEJ Newman… - arXiv preprint cond-mat …, 2003 - arxiv.org
Random graphs with prescribed degree sequences have been widely used as a model of
complex networks. Comparing an observed network to an ensemble of such graphs allows …

[HTML][HTML] Emergence of bimodality in controlling complex networks

T Jia, YY Liu, E Csóka, M Pósfai, JJ Slotine… - Nature …, 2013 - nature.com
Our ability to control complex systems is a fundamental challenge of contemporary science.
Recently introduced tools to identify the driver nodes, nodes through which we can achieve …

[HTML][HTML] Control capacity and a random sampling method in exploring controllability of complex networks

T Jia, AL Barabási - Scientific reports, 2013 - nature.com
Controlling complex systems is a fundamental challenge of network science. Recent
advances indicate that control over the system can be achieved through a minimum driver …