Recent advances in optimal transport for machine learning

EF Montesuma, FN Mboula, A Souloumiac - arXiv preprint arXiv …, 2023 - arxiv.org
Recently, Optimal Transport has been proposed as a probabilistic framework in Machine
Learning for comparing and manipulating probability distributions. This is rooted in its rich …

Inferring spatial and signaling relationships between cells from single cell transcriptomic data

Z Cang, Q Nie - Nature communications, 2020 - nature.com
Single-cell RNA sequencing (scRNA-seq) provides details for individual cells; however,
crucial spatial information is often lost. We present SpaOTsc, a method relying on structured …

Flot: Scene flow on point clouds guided by optimal transport

G Puy, A Boulch, R Marlet - European conference on computer vision, 2020 - Springer
We propose and study a method called FLOT that estimates scene flow on point clouds. We
start the design of FLOT by noticing that scene flow estimation on point clouds reduces to …

Graph optimal transport for cross-domain alignment

L Chen, Z Gan, Y Cheng, L Li… - … on Machine Learning, 2020 - proceedings.mlr.press
Cross-domain alignment between two sets of entities (eg, objects in an image, words in a
sentence) is fundamental to both computer vision and natural language processing. Existing …

A new perspective on" how graph neural networks go beyond weisfeiler-lehman?"

A Wijesinghe, Q Wang - International Conference on Learning …, 2022 - openreview.net
We propose a new perspective on designing powerful Graph Neural Networks (GNNs). In a
nutshell, this enables a general solution to inject structural properties of graphs into a …

Alignment and integration of spatial transcriptomics data

R Zeira, M Land, A Strzalkowski, BJ Raphael - Nature Methods, 2022 - nature.com
Spatial transcriptomics (ST) measures mRNA expression across thousands of spots from a
tissue slice while recording the two-dimensional (2D) coordinates of each spot. We …

Scalable Gromov-Wasserstein learning for graph partitioning and matching

H Xu, D Luo, L Carin - Advances in neural information …, 2019 - proceedings.neurips.cc
We propose a scalable Gromov-Wasserstein learning (S-GWL) method and establish a
novel and theoretically-supported paradigm for large-scale graph analysis. The proposed …

Tree mover's distance: Bridging graph metrics and stability of graph neural networks

CY Chuang, S Jegelka - Advances in Neural Information …, 2022 - proceedings.neurips.cc
Understanding generalization and robustness of machine learning models fundamentally
relies on assuming an appropriate metric on the data space. Identifying such a metric is …

Navigating the landscapes of spatial transcriptomics: How computational methods guide the way

R Li, X Chen, X Yang - Wiley Interdisciplinary Reviews: RNA, 2024 - Wiley Online Library
Spatially resolved transcriptomics has been dramatically transforming biological and
medical research in various fields. It enables transcriptome profiling at single‐cell, multi …

Metrics for graph comparison: a practitioner's guide

P Wills, FG Meyer - Plos one, 2020 - journals.plos.org
Comparison of graph structure is a ubiquitous task in data analysis and machine learning,
with diverse applications in fields such as neuroscience, cyber security, social network …