The restaurant at the end of the random walk: recent developments in the description of anomalous transport by fractional dynamics

R Metzler, J Klafter - Journal of Physics A: Mathematical and …, 2004 - iopscience.iop.org
Fractional dynamics has experienced a firm upswing during the past few years, having been
forged into a mature framework in the theory of stochastic processes. A large number of …

Single-polymer dynamics under constraints: scaling theory and computer experiment

A Milchev - Journal of Physics: Condensed Matter, 2011 - iopscience.iop.org
The relaxation, diffusion and translocation dynamics of single linear polymer chains in
confinement is briefly reviewed with emphasis on the comparison between theoretical …

Single molecule multiplexed nanopore protein screening in human serum using aptamer modified DNA carriers

JYY Sze, AP Ivanov, AEG Cass, JB Edel - Nature communications, 2017 - nature.com
The capability to screen a range of proteins at the single-molecule level with enhanced
selectivity in biological fluids has been in part a driving force in developing future diagnostic …

Deciphering ionic current signatures of DNA transport through a nanopore

A Aksimentiev - Nanoscale, 2010 - pubs.rsc.org
Within just a decade from the pioneering work demonstrating the utility of nanopores for
molecular sensing, nanopores have emerged as versatile systems for single-molecule …

Exploring transmembrane transport through α-hemolysin with grid-steered molecular dynamics

DB Wells, V Abramkina, A Aksimentiev - The Journal of chemical …, 2007 - pubs.aip.org
The transport of biomolecules across cell boundaries is central to cellular function. While
structures of many membrane channels are known, the permeation mechanism is known …

Dynamics of polymer translocation through nanopores: theory meets experiment

S Matysiak, A Montesi, M Pasquali, AB Kolomeisky… - Physical review …, 2006 - APS
The dynamics of translocation of polymer molecules through nanopores is investigated via
molecular dynamics. We find that an off-lattice minimalist model of the system is sufficient to …

[HTML][HTML] Dynamics of molecular motors and polymer translocation with sequence heterogeneity

Y Kafri, DK Lubensky, DR Nelson - Biophysical journal, 2004 - cell.com
The effect of sequence heterogeneity on polynucleotide translocation across a pore and on
simple models of molecular motors such as helicases, DNA polymerase/exonuclease, and …

Unforced translocation of a polymer chain through a nanopore: The solvent effect

D Wei, W Yang, X Jin, Q Liao - The Journal of chemical physics, 2007 - pubs.aip.org
The authors have performed the Langevin dynamics simulation to investigate the unforced
polymer translocation through a narrow nanopore in an impermeable membrane. The …

Polymer reversal rate calculated via locally scaled diffusion map

W Zheng, MA Rohrdanz, M Maggioni… - The Journal of chemical …, 2011 - pubs.aip.org
demonstrated that the reaction rate cannot be reproduced by projecting the dynamics onto a
single empirical reaction coordinate, a result suggesting the dynamics of this system cannot …

Polymer translocation through a cylindrical channel

CTA Wong, M Muthukumar - The Journal of Chemical Physics, 2008 - pubs.aip.org
A formalism of polymer translocation through a cylindrical channel of finite diameter and
length between two spherical compartments is developed. Unlike previous simplified …