High-resolution network biology: connecting sequence with function

CJ Ryan, P Cimermančič, ZA Szpiech, A Sali… - Nature Reviews …, 2013 - nature.com
Proteins are not monolithic entities; rather, they can contain multiple domains that mediate
distinct interactions, and their functionality can be regulated through post-translational …

Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases

M Narayanan, JL Huynh, K Wang, X Yang… - Molecular systems …, 2014 - embopress.org
Using expression profiles from postmortem prefrontal cortex samples of 624 dementia
patients and non‐demented controls, we investigated global disruptions in the co‐regulation …

Structural fingerprints, interactions, and signaling networks of RAS family proteins beyond RAS isoforms

S Nakhaei-Rad, F Haghighi, P Nouri… - Critical reviews in …, 2018 - Taylor & Francis
Among the signaling molecules indirectly linked to many different cell surface receptors,
RAS proteins essentially respond to a diverse range of extracellular cues. They control …

Genomic analysis reveals disruption of striatal neuronal development and therapeutic targets in human Huntington's disease neural stem cells

KL Ring, MC An, N Zhang, RN O'Brien, EM Ramos… - Stem cell reports, 2015 - cell.com
We utilized induced pluripotent stem cells (iPSCs) derived from Huntington's disease (HD)
patients as a human model of HD and determined that the disease phenotypes only …

A Large Scale Huntingtin Protein Interaction Network Implicates Rho GTPase Signaling Pathways in Huntington Disease*♦

C Tourette, B Li, R Bell, S O'Hare, LS Kaltenbach… - Journal of Biological …, 2014 - ASBMB
Huntington disease (HD) is an inherited neurodegenerative disease caused by a CAG
expansion in the HTT gene. Using yeast two-hybrid methods, we identified a large set of …

siRNA screen identifies QPCT as a druggable target for Huntington's disease

M Jimenez-Sanchez, W Lam, M Hannus… - Nature chemical …, 2015 - nature.com
Huntington's disease (HD) is a currently incurable neurodegenerative condition caused by
an abnormally expanded polyglutamine tract in huntingtin (HTT). We identified new …

Chronic methamphetamine interacts with BDNF Val66Met to remodel psychosis pathways in the mesocorticolimbic proteome

DW Greening, M Notaras, M Chen, R Xu, JD Smith… - Molecular …, 2021 - nature.com
Methamphetamine (Meth) abuse has reached epidemic proportions in many countries and
can induce psychotic episodes mimicking the clinical profile of schizophrenia. Brain-derived …

A striatal-enriched intronic GPCR modulates huntingtin levels and toxicity

Y Yao, X Cui, I Al-Ramahi, X Sun, B Li, J Hou, M Difiglia… - Elife, 2015 - elifesciences.org
Huntington's disease (HD) represents an important model for neurodegenerative disorders
and proteinopathies. It is mainly caused by cytotoxicity of the mutant huntingtin protein (Htt) …

Proteomic analysis of Huntington's disease medium spiny neurons identifies alterations in lipid droplets

KT Tshilenge, CG Aguirre, J Bons, AA Gerencser… - Molecular & cellular …, 2023 - ASBMB
Huntington's disease (HD) is a neurodegenerative disease caused by a CAG repeat
expansion in the Huntingtin (HTT) gene. The resulting polyglutamine (polyQ) tract alters the …

Phosphoproteomic dysregulation in Huntington's disease mice is rescued by environmental enrichment

I Mees, S Li, H Tran, CS Ang… - Brain …, 2022 - academic.oup.com
Huntington's disease is a fatal autosomal-dominant neurodegenerative disorder,
characterized by neuronal cell dysfunction and loss, primarily in the striatum, cortex and …