A review of the current state of single-cell proteomics and future perspective

R Ahmad, B Budnik - Analytical and Bioanalytical Chemistry, 2023 - Springer
Single-cell methodologies and technologies have started a revolution in biology which until
recently has primarily been limited to deep sequencing and imaging modalities. With the …

Sample preparation methods for targeted single-cell proteomics

A Eshghi, X Xie, D Hardie, MX Chen… - Journal of Proteome …, 2023 - ACS Publications
We compared three cell isolation and two proteomic sample preparation methods for single-
cell and near-single-cell analysis. Whole blood was used to quantify hemoglobin (Hb) and …

[HTML][HTML] DIA-MS proteome analysis of formalin-fixed paraffin-embedded glioblastoma tissues

K Weke, S Kote, J Faktor, S Al Shboul… - Analytica Chimica …, 2022 - Elsevier
Developments in quantitative proteomics and use of data-independent acquisition (DIA)
methodology is enabling measurement of proteins of interest in biological samples …

Multi-Omic Analysis of Esophageal Adenocarcinoma Uncovers Candidate Therapeutic Targets and Cancer-Selective Posttranscriptional Regulation

JR O'Neill, MY Mayordomo, G Mitulović… - Molecular & Cellular …, 2024 - mcponline.org
Efforts to address the poor prognosis associated with esophageal adenocarcinoma (EAC)
have been hampered by a lack of biomarkers to identify early disease and therapeutic …

Dilute to Enrich for Deeper Proteomics: A Yolk-Depleted Carrier for Limited Populations of Embryonic (Frog) Cells

LR Pade, C Lombard-Banek, J Li… - Journal of proteome …, 2023 - ACS Publications
Abundant proteins challenge deep mass spectrometry (MS) analysis of the proteome. Yolk,
the source of food in many developing vertebrate embryos, complicates chemical separation …

Coupling Microdroplet-Based Sample Preparation, Multiplexed Isobaric Labeling, and Nanoflow Peptide Fractionation for Deep Proteome Profiling of the Tissue …

M Veličković, TL Fillmore, IK Attah, C Posso… - Analytical …, 2023 - ACS Publications
There is increasing interest in developing in-depth proteomic approaches for mapping tissue
heterogeneity in a cell-type-specific manner to better understand and predict the function of …

Efficient and Sensitive Sample Preparation, Separations, and Data Acquisition for Label-Free Single-Cell Proteomics

T Truong, X Sanchez-Avila, KGI Webber… - … Based Single Cell …, 2024 - Springer
We describe a sensitive and efficient workflow for label-free single-cell proteomics that
spans sample preparation, liquid chromatography separations, and mass spectrometry data …

One-STAGE Tip Method for TMT-Based Proteomic Analysis of a Minimal Amount of Cells

N Park, H Lee, Y Kwon, S Ju, S Lee, S Yoo, KS Park… - ACS …, 2023 - ACS Publications
Liquid chromatography-tandem mass spectrometry (LC–MS)-based profiling of proteomes
with isobaric tag labeling from low-quantity biological and clinical samples, including needle …

An angled-shape tip-based strategy for highly sensitive proteomic profiling of a low number of cells

H Zhao, Y Chen, H Li, Y Zhang, W Zhang, W Qin - Analytical Methods, 2023 - pubs.rsc.org
Profiling proteins plays an essential role in understanding the functions and dynamic
networks in biological systems. Mass spectrometry-based proteomic analysis commonly …

Multi-omics integration in Esophageal Adenocarcinoma reveals therapeutic targets and EAC-specific regulation of protein abundances

JR O'Neill, MY Mayordomo, G Mitulović, S Al Shboul… - medRxiv, 2022 - medrxiv.org
Background Efforts to address the poor prognosis associated with esophageal
adenocarcinoma (EAC) have been hampered by a lack of biomarkers to identify early …