Gradients and consequences of heterogeneity in biofilms

J Jo, A Price-Whelan, LEP Dietrich - Nature Reviews Microbiology, 2022 - nature.com
Historically, appreciation for the roles of resource gradients in biology has fluctuated
inversely to the popularity of genetic mechanisms. Nevertheless, in microbiology specifically …

Chromatic acclimation in cyanobacteria: a diverse and widespread process for optimizing photosynthesis

JE Sanfilippo, L Garczarek, F Partensky… - Annual review of …, 2019 - annualreviews.org
Chromatic acclimation (CA) encompasses a diverse set of molecular processes that involve
the ability of cyanobacterial cells to sense ambient light colors and use this information to …

Forfeiting the priority effect: turnover defines biofilm community succession

CJ Brislawn, EB Graham, K Dana, P Ihardt… - The ISME …, 2019 - academic.oup.com
Microbial community succession is a fundamental process that affects underlying functions
of almost all ecosystems; yet the roles and fates of the most abundant colonizers are often …

Disentangling the drivers of functional complexity at the metagenomic level in Shark Bay microbial mat microbiomes

HL Wong, RA White III, PT Visscher… - The ISME …, 2018 - academic.oup.com
The functional metagenomic potential of Shark Bay microbial mats was examined for the first
time at a millimeter scale, employing shotgun sequencing of communities via the Illumina …

Functional profiles of phycospheric microorganisms during a marine dinoflagellate bloom

J Zhou, BY Zhang, K Yu, XP Du, JM Zhu, YH Zeng… - Water Research, 2020 - Elsevier
Harmful algal blooms (HABs) are an ecological concern but relatively few studies have
investigated the functional potential of bacterioplankton over a complete algal bloom cycle …

Functional shifts in microbial mats recapitulate early Earth metabolic transitions

A Gutiérrez-Preciado, A Saghaï, D Moreira… - Nature ecology & …, 2018 - nature.com
Phototrophic microbial mats dominated terrestrial ecosystems for billions of years, largely
causing, through cyanobacterial oxygenic photosynthesis, but also undergoing, the Great …

Applying genome-resolved metagenomics to deconvolute the halophilic microbiome

G Uritskiy, J DiRuggiero - Genes, 2019 - mdpi.com
In the past decades, the study of microbial life through shotgun metagenomic sequencing
has rapidly expanded our understanding of environmental, synthetic, and clinical microbial …

Biases in genome reconstruction from metagenomic data

WC Nelson, BJ Tully, JM Mobberley - PeerJ, 2020 - peerj.com
Background Advances in sequencing, assembly, and assortment of contigs into species-
specific bins has enabled the reconstruction of genomes from metagenomic data (MAGs) …

Seasonal dynamics and driving mechanisms of microbial biogenic elements cycling function, assembly process, and co-occurrence network in plateau lake sediments

J Lu, C Qing, X Huang, J Zeng, Y Zheng… - Science of The Total …, 2024 - Elsevier
Microbial community diversity significantly varies with seasonality. However, little is known
about seasonal variation of microbial community functions in lake sediments and their …

Bioprospecting of unexplored halophilic actinobacteria against human infectious pathogens

AJ Rathinam, H Santhaseelan, HU Dahms… - 3 Biotech, 2023 - Springer
Human pathogenic diseases received much attention recently due to their uncontrolled
spread of antimicrobial resistance (AMR) which causes several threads every year. Effective …