A review of progress in single particle tracking: from methods to biophysical insights

C Manzo, MF Garcia-Parajo - Reports on progress in physics, 2015 - iopscience.iop.org
Optical microscopy has for centuries been a key tool to study living cells with minimum
invasiveness. The advent of single molecule techniques over the past two decades has …

Transforms and operators for directional bioimage analysis: a survey

Z Püspöki, M Storath, D Sage, M Unser - Focus on bio-image informatics, 2016 - Springer
We give a methodology-oriented perspective on directional image analysis and rotation-
invariant processing. We review the state of the art in the field and make connections with …

Precisely and accurately localizing single emitters in fluorescence microscopy

H Deschout, FC Zanacchi, M Mlodzianoski, A Diaspro… - Nature …, 2014 - nature.com
Methods based on single-molecule localization and photophysics have brought nanoscale
imaging with visible light into reach. This has enabled single-particle tracking applications …

Optimized localization analysis for single-molecule tracking and super-resolution microscopy

KI Mortensen, LS Churchman, JA Spudich… - Nature methods, 2010 - nature.com
We optimally localized isolated fluorescent beads and molecules imaged as diffraction-
limited spots, determined the orientation of molecules and present reliable formulas for the …

Fluorophore localization algorithms for super-resolution microscopy

A Small, S Stahlheber - Nature methods, 2014 - nature.com
Super-resolution localization microscopy methods provide powerful new capabilities for
probing biology at the nanometer scale via fluorescence. These methods rely on two key …

[HTML][HTML] Advances in analysis of low signal-to-noise images link dynamin and AP2 to the functions of an endocytic checkpoint

F Aguet, CN Antonescu, M Mettlen, SL Schmid… - Developmental cell, 2013 - cell.com
Numerous endocytic accessory proteins (EAPs) mediate assembly and maturation of
clathrin-coated pits (CCPs) into cargo-containing vesicles. Analysis of EAP function through …

Fisher information theory for parameter estimation in single molecule microscopy: tutorial

J Chao, E Sally Ward, RJ Ober - Journal of the Optical Society of …, 2016 - opg.optica.org
Estimation of a parameter of interest from image data represents a task that is commonly
carried out in single molecule microscopy data analysis. The determination of the positional …

Traction microscopy to identify force modulation in subresolution adhesions

SJ Han, Y Oak, A Groisman, G Danuser - Nature methods, 2015 - nature.com
We present a reconstruction algorithm that resolves cellular tractions in diffraction-limited
nascent adhesions (NAs). The enabling method is the introduction of sparsity regularization …

Simultaneous, accurate measurement of the 3D position and orientation of single molecules

MP Backlund, MD Lew, AS Backer… - Proceedings of the …, 2012 - National Acad Sciences
Recently, single molecule-based superresolution fluorescence microscopy has surpassed
the diffraction limit to improve resolution to the order of 20 nm or better. These methods …

Quantitative nanoscale imaging of orientational order in biological filaments by polarized superresolution microscopy

CA Valades Cruz, HA Shaban… - Proceedings of the …, 2016 - National Acad Sciences
Essential cellular functions as diverse as genome maintenance and tissue morphogenesis
rely on the dynamic organization of filamentous assemblies. For example, the precise …