An introduction to the analysis of shotgun metagenomic data
TJ Sharpton - Frontiers in plant science, 2014 - frontiersin.org
Environmental DNA sequencing has revealed the expansive biodiversity of microorganisms
and clarified the relationship between host-associated microbial communities and host …
and clarified the relationship between host-associated microbial communities and host …
Thermophiles in the genomic era: Biodiversity, science, and applications
Thermophiles and hyperthermophiles are present in various regions of the Earth, including
volcanic environments, hot springs, mud pots, fumaroles, geysers, coastal thermal springs …
volcanic environments, hot springs, mud pots, fumaroles, geysers, coastal thermal springs …
Genomic inference of the metabolism and evolution of the archaeal phylum Aigarchaeota
Microbes of the phylum Aigarchaeota are widely distributed in geothermal environments, but
their physiological and ecological roles are poorly understood. Here we analyze six …
their physiological and ecological roles are poorly understood. Here we analyze six …
Diversity of thermophiles in a Malaysian hot spring determined using 16S rRNA and shotgun metagenome sequencing
The Sungai Klah (SK) hot spring is the second hottest geothermal spring in Malaysia. This
hot spring is a shallow, 150-m-long, fast-flowing stream, with temperatures varying from 50 …
hot spring is a shallow, 150-m-long, fast-flowing stream, with temperatures varying from 50 …
Determining the reliability of measuring mercury cycling gene abundance with correlations with mercury and methylmercury concentrations
GA Christensen, CM Gionfriddo, AJ King… - … science & technology, 2019 - ACS Publications
Methylmercury (MeHg) is a bioaccumulative toxic contaminant in many ecosystems, but
factors governing its production are poorly understood. Recent work has shown that the …
factors governing its production are poorly understood. Recent work has shown that the …
Metagenomic analysis of hot springs in Central India reveals hydrocarbon degrading thermophiles and pathways essential for survival in extreme environments
Extreme ecosystems such as hot springs are of great interest as a source of novel
extremophilic species, enzymes, metabolic functions for survival and biotechnological …
extremophilic species, enzymes, metabolic functions for survival and biotechnological …
Seasonal variations in culturable archaea and their plant growth promoting attributes to predict their role in establishment of vegetation in Rann of Kutch
Archaea are unique microorganisms that are present in ecological niches of high
temperature, pH and high salinity. Archaea may be present freely or associated with plant …
temperature, pH and high salinity. Archaea may be present freely or associated with plant …
MCycDB: a curated database for comprehensively profiling methane cycling processes of environmental microbiomes
L Qian, X Yu, J Zhou, H Gu, J Ding… - Molecular Ecology …, 2022 - Wiley Online Library
Methane is a critical greenhouse gas with significant impacts on environmental and global
change. However, CH4 cycling processes and coupling mechanisms with the …
change. However, CH4 cycling processes and coupling mechanisms with the …
New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments
Members of the archaeal order Methanomassiliicoccales are methanogens mainly
associated with animal digestive tracts. However, environmental members remain poorly …
associated with animal digestive tracts. However, environmental members remain poorly …
Psychrotrophic microbiomes: molecular diversity and beneficial role in plant growth promotion and soil health
Prospecting the cold habitats has led to the isolation of a great diversity of psychrotrophic
microbes belonging to different groups. The cold-adapted microbes have potential …
microbes belonging to different groups. The cold-adapted microbes have potential …