Folding dynamics of polymorphic G‐quadruplex structures

JT Grün, H Schwalbe - Biopolymers, 2022 - Wiley Online Library
Abstract G‐quadruplexes (G4), found in numerous places within the human genome, are
involved in essential processes of cell regulation. Chromosomal DNA G4s are involved for …

Structure, topology, and stability of multiple g-quadruplexes in long telomeric overhangs

S Shiekh, SG Kodikara, H Balci - Journal of molecular biology, 2024 - Elsevier
Telomeres and their single stranded overhangs gradually shorten with successive cell
divisions, as part of the natural aging process, but can be elongated by telomerase, a …

Structural polymorphism of guanine quadruplex-containing regions in human promoters

C Hennecker, L Yamout, C Zhang, C Zhao… - International Journal of …, 2022 - mdpi.com
Intramolecular guanine quadruplexes (G4s) are non-canonical nucleic acid structures
formed by four guanine (G)-rich tracts that assemble into a core of stacked planar tetrads. G4 …

Structural genomics approach to investigate deleterious impact of nsSNPs in conserved telomere maintenance component 1

A Choudhury, T Mohammad, N Samarth, A Hussain… - Scientific reports, 2021 - nature.com
Conserved telomere maintenance component 1 (CTC1) is an important component of the
CST (CTC1-STN1-TEN1) complex, involved in maintaining the stability of telomeric DNA …

Protection of the Telomeric Junction by the Shelterin Complex

S Shiekh, D Feldt, A Jack, SG Kodikara… - Journal of the …, 2024 - ACS Publications
Shelterin serves critical roles in suppressing superfluous DNA damage repair pathways on
telomeres. The junction between double-stranded telomeric tracts (dsTEL) and single …

Exploring the Landscape of Aptamers: From Cross-Reactive to Selective to Specific, High-Affinity Receptors for Cocaine

K Yang, O Alkhamis, J Canoura, A Bryant, EM Gong… - JACS Au, 2024 - ACS Publications
We reported over 20 years ago MNS-4.1, the first DNA aptamer with a micromolar affinity for
cocaine. MNS-4.1 is based on a structural motif that is very common in any random pool of …

Antiparallel G-Quadruplex Formation Hinders Conversion to a Parallel Topology

J Xia, J Chen, J Zhou, M Cheng, X Zhuang… - The Journal of …, 2024 - ACS Publications
G-quadruplexes (G4s) are four-stranded structures formed by guanine-rich sequences.
While their structures, properties, and applications have been extensively studied, an …

Computer Folding of Parallel DNA G‐Quadruplex: Hitchhiker's Guide to the Conformational Space

M Janeček, P Kührová, V Mlýnský… - Journal of …, 2025 - Wiley Online Library
Guanine quadruplexes (GQs) play crucial roles in various biological processes, and
understanding their folding pathways provides insight into their stability, dynamics, and …

Shelterin reduces the accessibility of telomeric overhangs

S Shiekh, A Jack, A Saurabh, G Mustafa… - Nucleic acids …, 2022 - academic.oup.com
Telomeres terminate with a 50–300 bases long single-stranded G-rich overhang, which can
be misrecognized as a DNA damage repair site. Shelterin plays critical roles in maintaining …

G-quadruplexes formation within the promoter of TEAD4 oncogene and their interaction with Vimentin

M Cozzaglio, S Ceschi, E Groaz, M Sturlese… - Frontiers in …, 2022 - frontiersin.org
G-quadruplexes (G4s) are nucleic acid secondary structures detected within human
chromosomes, that cluster at gene promoters and enhancers. This suggests that G4s may …