Approximate Bayesian computation (ABC) in practice

K Csilléry, MGB Blum, OE Gaggiotti… - Trends in ecology & …, 2010 - cell.com
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …

Approximate Bayesian computation in evolution and ecology

MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
In the past 10years a statistical technique, approximate Bayesian computation (ABC), has
been developed that can be used to infer parameters and choose between models in the …

Efficient ancestry and mutation simulation with msprime 1.0

F Baumdicker, G Bisschop, D Goldstein, G Gower… - Genetics, 2022 - academic.oup.com
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …

DIYABC v2. 0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and …

JM Cornuet, P Pudlo, J Veyssier, A Dehne-Garcia… - …, 2014 - academic.oup.com
Motivation: DIYABC is a software package for a comprehensive analysis of population
history using approximate Bayesian computation on DNA polymorphism data. Version 2.0 …

Approximate bayesian computation

M Sunnåker, AG Busetto, E Numminen… - PLoS computational …, 2013 - journals.plos.org
Approximate Bayesian computation (ABC) constitutes a class of computational methods
rooted in Bayesian statistics. In all model-based statistical inference, the likelihood function …

Approximate Bayesian computational methods

JM Marin, P Pudlo, CP Robert, RJ Ryder - Statistics and computing, 2012 - Springer
Abstract Approximate Bayesian Computation (ABC) methods, also known as likelihood-free
techniques, have appeared in the past ten years as the most satisfactory approach to …

abc: an R package for approximate Bayesian computation (ABC)

K Csilléry, O François, MGB Blum - Methods in ecology and …, 2012 - Wiley Online Library
Many recent statistical applications involve inference under complex models, where it is
computationally prohibitive to calculate likelihoods but possible to simulate data …

Reliable ABC model choice via random forests

P Pudlo, JM Marin, A Estoup, JM Cornuet… - …, 2016 - academic.oup.com
Abstract Motivation: Approximate Bayesian computation (ABC) methods provide an
elaborate approach to Bayesian inference on complex models, including model choice. Both …

Reliability of genetic bottleneck tests for detecting recent population declines

MZ Peery, R Kirby, BN Reid, R Stoelting… - Molecular …, 2012 - Wiley Online Library
The identification of population bottlenecks is critical in conservation because populations
that have experienced significant reductions in abundance are subject to a variety of genetic …

Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation

P Fearnhead, D Prangle - … of the Royal Statistical Society Series …, 2012 - academic.oup.com
Many modern statistical applications involve inference for complex stochastic models, where
it is easy to simulate from the models, but impossible to calculate likelihoods. Approximate …