Integrating Omics Technologies for a Comprehensive Understanding of the Microbiome and Its Impact on Cattle Production

H Kaur, G Kaur, T Gupta, D Mittal, SA Ali - Biology, 2023 - mdpi.com
Simple Summary This review article highlights the pivotal role of ruminant production in
global agriculture and the challenges posed by population growth. The focus on refining …

Prevalence and Implications of Shiga Toxin-Producing E. coli in Farm and Wild Ruminants

R Ray, P Singh - Pathogens, 2022 - mdpi.com
Shiga-toxin-producing Escherichia coli (STEC) is a food-borne pathogen that causes human
gastrointestinal infections across the globe, leading to kidney failure or even death in severe …

Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome

D Salamon, B Zapała, A Krawczyk… - Applied Microbiology …, 2022 - Springer
Amplicon-based next-generation sequencing (NGS) of the 16S ribosomal RNA (16S)
regions is a culture-free method used to identify and analyze Procaryota occurring within a …

Farm to fork impacts of super-shedders and high-event periods on food safety

VS Castro, E Figueiredo, T McAllister… - Trends in Food Science & …, 2022 - Elsevier
Background Microbiological control with the development of robust methodologies has been
extensively studied in food science. However, equally important as reducing the microbial …

Exploring the impact of grazing on fecal and soil microbiome dynamics in small ruminants in organic crop-livestock integration systems

S Cheong, K Aguirre-Siliezar, SR Williams… - PloS one, 2025 - journals.plos.org
In integrated crop-livestock systems, livestock graze on cover crops and deposit raw manure
onto fields to improve soil health and fertility. However, enteric pathogens shed by grazing …

Linking active rectal mucosa–attached microbiota to host immunity reveals its role in host–pathogenic STEC O157 interactions

Z Pan, Y Chen, M Zhou, TA McAllister… - The ISME …, 2024 - academic.oup.com
The rectal–anal junction (RAJ) is the major colonization site of Shiga toxin–producing
Escherichia coli (STEC) O157 in beef cattle, leading to transmission of this foodborne …

Untargeted metabolomics and metagenomics reveal signatures for intramammary ceftiofur treatment and lactation stage in the cattle hindgut

KA Vasco, ZA Hansen, AL Schilmiller… - Frontiers in Molecular …, 2024 - frontiersin.org
The gut microbiota in cattle is essential for protein, energy, and vitamin production and
hence, microbiota perturbations can affect cattle performance. This study evaluated the …

Resistance Patterns, mcr-4 and OXA-48 Genes, and Virulence Factors of Escherichia coli from Apennine Chamois Living in Sympatry with Domestic Species, Italy

C Smoglica, A Vergara, S Angelucci, AR Festino… - Animals, 2022 - mdpi.com
Simple Summary Antimicrobial resistance is a global threat involving human, animal, and
environmental health. Evidence of antibiotic resistance was found in pets, livestock, humans …

[HTML][HTML] Host–Pathogen Interactions during Shiga Toxin-Producing Escherichia coli Adherence and Colonization in the Bovine Gut: A Comprehensive Review

LK Edison, IT Kudva, S Kariyawasam - Microorganisms, 2024 - mdpi.com
Shiga toxin-producing Escherichia coli (STEC) is a significant public health threat due to its
ability to cause severe gastrointestinal diseases in humans, ranging from diarrhea to life …

Antibiotic Resistance and Genomic Analysis of Shiga Toxin–Producing Escherichia coli from Dairy Cattle, Raw Milk, and Farm Environment in Shaanxi Province …

P Zhang, L Liu, H Sheng, M Zhang, T Wang… - Foodborne …, 2024 - liebertpub.com
To investigate the epidemiology of Shiga toxin–producing Escherichia coli (STEC) in dairy
cattle, 975 samples (185 feces, 34 silage, 36 cattle drinking water, 360 raw milk, and 360 …