Comparative primate genomics: emerging patterns of genome content and dynamics

J Rogers, RA Gibbs - Nature Reviews Genetics, 2014 - nature.com
Advances in genome sequencing technologies have created new opportunities for
comparative primate genomics. Genome assemblies have been published for various …

Comprehensive evaluation of structural variation detection algorithms for whole genome sequencing

S Kosugi, Y Momozawa, X Liu, C Terao, M Kubo… - Genome biology, 2019 - Springer
Abstract Background Structural variations (SVs) or copy number variations (CNVs) greatly
impact the functions of the genes encoded in the genome and are responsible for diverse …

What to compare and how: comparative transcriptomics for evo‐devo

J Roux, M Rosikiewicz… - Journal of Experimental …, 2015 - Wiley Online Library
Evolutionary developmental biology has grown historically from the capacity to relate
patterns of evolution in anatomy to patterns of evolution of expression of specific genes …

Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants

Y He, X Luo, B Zhou, T Hu, X Meng, PA Audano… - Nature …, 2019 - nature.com
We present a high-quality de novo genome assembly (rheMacS) of the Chinese rhesus
macaque (Macaca mulatta) using long-read sequencing and multiplatform scaffolding …

The genome of the vervet (Chlorocebus aethiops sabaeus)

WC Warren, AJ Jasinska, R García-Pérez… - Genome …, 2015 - genome.cshlp.org
We describe a genome reference of the African green monkey or vervet (Chlorocebus
aethiops). This member of the Old World monkey (OWM) superfamily is uniquely valuable for …

Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation

D Xu, P Pavlidis, RO Taskent… - Molecular Biology …, 2017 - academic.oup.com
One of the most abundant proteins in human saliva, mucin-7, is encoded by the MUC7 gene,
which harbors copy number variable subexonic repeats (PTS-repeats) that affect the size …

CNVpytor: a tool for copy number variation detection and analysis from read depth and allele imbalance in whole-genome sequencing

M Suvakov, A Panda, C Diesh, I Holmes… - Gigascience, 2021 - academic.oup.com
Background Detecting copy number variations (CNVs) and copy number alterations (CNAs)
based on whole-genome sequencing data is important for personalized genomics and …

Natural selection in the great apes

A Cagan, C Theunert, H Laayouni… - Molecular biology …, 2016 - academic.oup.com
Natural selection is crucial for the adaptation of populations to their environments. Here, we
present the first global study of natural selection in the Hominidae (humans and great apes) …

An evolutionary perspective on the impact of genomic copy number variation on human health

M Saitou, O Gokcumen - Journal of molecular evolution, 2020 - Springer
Copy number variants (CNVs), deletions and duplications of segments of DNA, account for
at least five times more variable base pairs in humans than single-nucleotide variants …

Making the difference: integrating structural variation detection tools

K Lin, S Smit, G Bonnema… - Briefings in …, 2015 - academic.oup.com
From prokaryotes to eukaryotes, phenotypic variation, adaptation and speciation has been
associated with structural variation between genomes of individuals within the same …