High-resolution structural variants catalogue in a large-scale whole genome sequenced bovine family cohort data

YL Lee, M Bosse, H Takeda, GCM Moreira, L Karim… - BMC genomics, 2023 - Springer
Abstract Background Structural variants (SVs) are chromosomal segments that differ
between genomes, such as deletions, duplications, insertions, inversions and …

A 12 kb multi-allelic copy number variation encompassing a GC gene enhancer is associated with mastitis resistance in dairy cattle

YL Lee, H Takeda, G Costa Monteiro Moreira… - PLoS …, 2021 - journals.plos.org
Clinical mastitis (CM) is an inflammatory disease occurring in the mammary glands of
lactating cows. CM is under genetic control, and a prominent CM resistance QTL located on …

miR-155-5p regulates hypoxia-induced pulmonary artery smooth muscle cell function by targeting PYGL

G Wang, X Tao, L Peng - Bioengineered, 2022 - Taylor & Francis
Pulmonary arterial hypertension (PAH) is a cardiovascular disease that has high incidence
and causes massive deaths. miR-155-5p/PYGL pathway was revealed to play a crucial role …

TWAS revealed significant causal loci for milk production and its composition in Murrah buffaloes

S Chhotaray, V Vohra, V Uttam, A Santhosh… - Scientific Reports, 2023 - nature.com
Milk yield is the most complex trait in dairy animals, and mapping all causal variants even
with smallest effect sizes has been difficult with the genome-wide association study (GWAS) …

Associations between circulating IGF-1 concentrations, disease status and the leukocyte transcriptome in early lactation dairy cows

DC Wathes, F Becker, L Buggiotti, MA Crowe, C Ferris… - Ruminants, 2021 - mdpi.com
Peripartum dairy cows commonly experience negative energy balance (EB) and
immunosuppression together with high incidences of infectious and metabolic disease. This …

[HTML][HTML] Prediction of key milk biomarkers in dairy cows through milk mid-infrared spectra and international collaborations

C Grelet, T Larsen, MA Crowe, DC Wathes… - Journal of Dairy …, 2024 - Elsevier
At the individual cow level, suboptimum fertility, mastitis, negative energy balance, and
ketosis are major issues in dairy farming. These problems are widespread on dairy farms …

[HTML][HTML] Genome-wide association study of conformation traits in Brazilian holstein cattle

EFP Silva, RC Gaia, HA Mulim, LFB Pinto, LHS Iung… - Animals, 2024 - mdpi.com
Simple Summary Conformation traits have been a key breeding goal in dairy cattle for many
years due to their relationship with animal productivity and other relevant characteristics …

An organism-wide ATAC-seq peak catalog for the bovine and its use to identify regulatory variants

C Yuan, L Tang, T Lopdell, VA Petrov… - Genome …, 2023 - genome.cshlp.org
We report the generation of an organism-wide catalog of 976,813 cis-acting regulatory
elements for the bovine detected by the assay for transposase accessible chromatin using …

Hepatic global transcriptomic profiles of Holstein cows according to parity reveal age-related changes in early lactation

Z Cheng, C Ferris, MA Crowe, KL Ingvartsen… - International Journal of …, 2023 - mdpi.com
Cows can live for over 20 years, but their productive lifespan averages only around 3 years
after first calving. Liver dysfunction can reduce lifespan by increasing the risk of metabolic …

[HTML][HTML] Influence of the concentrate inclusion level in a grass silage–based diet on hepatic transcriptomic profiles in Holstein-Friesian dairy cows in early lactation

Z Cheng, MW Little, C Ferris, H Takeda… - Journal of Dairy …, 2023 - Elsevier
Excessive negative energy balance in early lactation is linked to an increased disease risk
but may be mitigated by appropriate nutrition. The liver plays central roles in both …