A community resource to mass explore the wheat grain proteome and its application to the late-maturity alpha-amylase (LMA) problem

D Vincent, AD Bui, V Ezernieks, S Shahinfar… - …, 2023 - academic.oup.com
Background Late-maturity alpha-amylase (LMA) is a wheat genetic defect causing the
synthesis of high isoelectric point alpha-amylase following a temperature shock during mid …

Cross-species transcriptomics reveals differential regulation of essential photosynthesis genes in Hirschfeldia incana

F Garassino, S Bengoa Luoni… - G3: Genes …, 2024 - academic.oup.com
Photosynthesis is the only yield-related trait not yet substantially improved by plant breeding.
Previously, we have established H. incana as the model plant for high photosynthetic light …

Long-term cold, freezing and drought: overlapping and specific regulatory mechanisms and signal transduction in tea plant (Camellia sinensis (L.) Kuntze)

L Samarina, S Wang, L Malyukova… - Frontiers in Plant …, 2023 - frontiersin.org
Introduction Low temperatures and drought are two main environmental constraints
reducing the yield and geographical distribution of horticultural crops worldwide …

CisCross: A gene list enrichment analysis to predict upstream regulators in Arabidopsis thaliana

VV Lavrekha, VG Levitsky, AV Tsukanov… - Frontiers in Plant …, 2022 - frontiersin.org
Having DNA-binding profiles for a sufficient number of genome-encoded transcription
factors (TFs) opens up the perspectives for systematic evaluation of the upstream regulators …

Expression of the Arabidopsis redox-related LEA protein, SAG21 is regulated by ERF, NAC and WRKY transcription factors

KV Evans, E Ransom, S Nayakoti, B Wilding… - Scientific Reports, 2024 - nature.com
SAG21/LEA5 is an unusual late embryogenesis abundant protein in Arabidopsis thaliana,
that is primarily mitochondrially located and may be important in regulating translation in …

Plant biology and Biotechnology: focus on genomics and bioinformatics

YL Orlov, VA Ivanisenko, OB Dobrovolskaya… - International Journal of …, 2022 - mdpi.com
The study of molecular mechanisms of plant stress response is important for
agrobiotechnology applications as it was discussed at series of recent bioinformatics …

[HTML][HTML] Catching the Big Fish in Big Data: A Meta-Analysis of Zebrafish Kidney scRNA-Seq Datasets Highlights Conserved Molecular Profiles of Macrophages and …

AV Bobrovskikh, US Zubairova, LG Naumenko… - …, 2024 - pmc.ncbi.nlm.nih.gov
Simple Summary This paper presents a meta-analysis of currently available single-cell RNA
sequencing (scRNAseq) datasets from zebrafish kidneys. Our work aims to identify key …

Transcriptomic meta-analysis and functional validation identify genes linked to adaptation and involved in high-light acclimation in Synechocystis sp. PCC 6803

EM Abdel-Salam, T Figueroa-Gonzalez… - Frontiers in …, 2023 - frontiersin.org
Several mechanisms of high light (HL) acclimation have been identified in Synechocystis sp.
PCC 6803. However, there are still gaps in understanding of the complex regulatory …

Comparative transcriptomics of Hirschfeldia incana and relatives highlights differences in photosynthetic pathways

F Garassino, SB Luoni, T Cumerlato, FR Marquez… - bioRxiv, 2023 - biorxiv.org
Photosynthesis is the only yield-related trait that has not yet been substantially improved by
plant breeding. The limited results of previous attempts to increase yield via improvement of …

Finding the LMA needle in the wheat proteome haystack

D Vincent, AD Bui, V Ezernieks, S Shahinfar, T Luke… - bioRxiv, 2023 - biorxiv.org
Late maturity alpha-amylase (LMA) is a wheat genetic defect causing the synthesis of high
isoelectric point (pI) alpha-amylase in the aleurone as a result of a temperature shock during …