A survey of methods for deciding whether a reaction network is multistationary

B Joshi, A Shiu - Mathematical Modelling of Natural Phenomena, 2015 - mmnp-journal.org
Which reaction networks, when taken with mass-action kinetics, have the capacity for
multiple steady states? There is no complete answer to this question, but over the last 40 …

A geometric approach to the global attractor conjecture

M Gopalkrishnan, E Miller, A Shiu - SIAM Journal on Applied Dynamical …, 2014 - SIAM
This paper introduces the class of strongly endotactic networks, a subclass of the endotactic
networks introduced by Craciun, Nazarov, and Pantea. The main result states that the global …

Some results on injectivity and multistationarity in chemical reaction networks

M Banaji, C Pantea - SIAM Journal on Applied Dynamical Systems, 2016 - SIAM
The goal of this paper is to gather and develop some necessary and sufficient criteria for
injectivity and multistationarity in vector fields associated with a chemical reaction network …

A global convergence result for processive multisite phosphorylation systems

C Conradi, A Shiu - Bulletin of mathematical biology, 2015 - Springer
Multisite phosphorylation plays an important role in intracellular signaling. There has been
much recent work aimed at understanding the dynamics of such systems when the …

Inheritance of oscillation in chemical reaction networks

M Banaji - Applied Mathematics and Computation, 2018 - Elsevier
Some results are presented on how oscillation is inherited by chemical reaction networks
(CRNs) when they are built in natural ways from smaller oscillatory networks. The main …

Local and global stability of equilibria for a class of chemical reaction networks

P Donnell, M Banaji - SIAM Journal on Applied Dynamical Systems, 2013 - SIAM
A class of chemical reaction networks is described with the property that each positive
equilibrium is locally asymptotically stable relative to its stoichiometry class, an invariant …

Robust persistence and permanence of polynomial and power law dynamical systems

JD Brunner, G Craciun - SIAM Journal on Applied Mathematics, 2018 - SIAM
A persistent dynamical system in R^d_>0 is one whose solutions have positive lower
bounds for large t, while a permanent dynamical system in R^d_>0 is one whose solutions …

Interplay between Contractivity and Monotonicity for Reaction Networks

A Duvall, MA Al-Radhawi, DD Jatkar… - arXiv preprint arXiv …, 2024 - arxiv.org
This work studies relationships between monotonicity and contractivity, and applies the
results to establish that many reaction networks are weakly contractive, and thus, under …

Computationally Checking if a Reaction Network is Monotone or Non-expansive

A Duvall - arXiv preprint arXiv:2409.12487, 2024 - arxiv.org
We describe a procedure for testing for non-expansivity and monotonicity of reaction
networks. We demonstrate how this procedure can be used to generate explicit norms for …

A projection argument for differential inclusions, with applications to persistence of mass-action kinetics

M Gopalkrishnan, E Miller, A Shiu - SIGMA. Symmetry, Integrability and …, 2013 - emis.de
Motivated by questions in mass-action kinetics, we introduce the notion of vertexical family of
differential inclusions. Defined on open hypercubes, these families are characterized by …