A review on applications of computational methods in drug screening and design

X Lin, X Li, X Lin - Molecules, 2020 - mdpi.com
Drug development is one of the most significant processes in the pharmaceutical industry.
Various computational methods have dramatically reduced the time and cost of drug …

Linear discriminant analysis

S Zhao, B Zhang, J Yang, J Zhou, Y Xu - Nature Reviews Methods …, 2024 - nature.com
Linear discriminant analysis (LDA) is a versatile statistical method for reducing redundant
and noisy information from an original sample to its essential features. Particularly, LDA is a …

Many-body descriptors for predicting molecular properties with machine learning: Analysis of pairwise and three-body interactions in molecules

W Pronobis, A Tkatchenko… - Journal of chemical theory …, 2018 - ACS Publications
Machine learning (ML) based prediction of molecular properties across chemical compound
space is an important and alternative approach to efficiently estimate the solutions of highly …

Towards machine learning discovery of dual antibacterial drug–nanoparticle systems

K Diéguez-Santana, H González-Díaz - Nanoscale, 2021 - pubs.rsc.org
Artificial Intelligence/Machine Learning (AI/ML) algorithms may speed up the design of
DADNP systems formed by Antibacterial Drugs (AD) and Nanoparticles (NP). In this work …

Modeling antibacterial activity with machine learning and fusion of chemical structure information with microorganism metabolic networks

D Nocedo-Mena, C Cornelio… - Journal of chemical …, 2019 - ACS Publications
Predicting the activity of new chemical compounds over pathogenic microorganisms with
different metabolic reaction networks (MRN s) is an important goal due to the different …

Speeding up early drug discovery in antiviral research: a fragment-based in silico approach for the design of virtual anti-hepatitis C leads

A Speck-Planche… - ACS Combinatorial …, 2017 - ACS Publications
Hepatitis C constitutes an unresolved global health problem. This infectious disease is
caused by the hepatotropic hepatitis C virus (HCV), and it can lead to the occurrence of life …

PTML combinatorial model of ChEMBL compounds assays for multiple types of cancer

H Bediaga, S Arrasate… - ACS Combinatorial …, 2018 - ACS Publications
Determining the target proteins of new anticancer compounds is a very important task in
Medicinal Chemistry. In this sense, chemists carry out preclinical assays with a high number …

BET bromodomain inhibitors: Fragment-based in silico design using multi-target QSAR models

A Speck-Planche, MT Scotti - Molecular Diversity, 2019 - Springer
Epigenetics has become a focus of interest in drug discovery. In this sense, bromodomain-
containing proteins have emerged as potential epigenetic targets in cancer research and …

Big Data Challenges Targeting Proteins in GPCR Signaling Pathways; Combining PTML-ChEMBL Models and [35S]GTPγS Binding Assays

R Diez-Alarcia, V Yáñez-Pérez… - ACS chemical …, 2019 - ACS Publications
G-protein-coupled receptors (GPCRs), also known as 7-transmembrane receptors, are the
single largest class of drug targets. Consequently, a large amount of preclinical assays …

Multioutput perturbation-theory machine learning (PTML) model of ChEMBL data for antiretroviral compounds

E Vásquez-Domínguez… - Molecular …, 2019 - ACS Publications
Retroviral infections, such as HIV, are, until now, diseases with no cure. Medicine and
pharmaceutical chemistry need and consider it a huge goal to define target proteins of new …