Concepts of artificial intelligence for computer-assisted drug discovery

X Yang, Y Wang, R Byrne, G Schneider… - Chemical …, 2019 - ACS Publications
Artificial intelligence (AI), and, in particular, deep learning as a subcategory of AI, provides
opportunities for the discovery and development of innovative drugs. Various machine …

ADMET modeling approaches in drug discovery

LLG Ferreira, AD Andricopulo - Drug discovery today, 2019 - Elsevier
Highlights•ADMET modeling plays a pivotal part in drug discovery.•Chemoinformatics has
evolved into robust machine learning approaches.•Comprehensive web-based platforms for …

Meta-4mCpred: a sequence-based meta-predictor for accurate DNA 4mC site prediction using effective feature representation

B Manavalan, S Basith, TH Shin, L Wei… - Molecular Therapy-Nucleic …, 2019 - cell.com
DNA N4-methylcytosine (4mC) is an important genetic modification and plays crucial roles in
differentiation between self and non-self DNA and in controlling DNA replication, cell cycle …

iBCE-EL: a new ensemble learning framework for improved linear B-cell epitope prediction

B Manavalan, RG Govindaraj, TH Shin… - Frontiers in …, 2018 - frontiersin.org
Identification of B-cell epitopes (BCEs) is a fundamental step for epitope-based vaccine
development, antibody production, and disease prevention and diagnosis. Due to the …

Artificial intelligence in drug discovery: a comprehensive review of data-driven and machine learning approaches

H Kim, E Kim, I Lee, B Bae, M Park, H Nam - … and Bioprocess Engineering, 2020 - Springer
As expenditure on drug development increases exponentially, the overall drug discovery
process requires a sustainable revolution. Since artificial intelligence (AI) is leading the …

GLORYx: prediction of the metabolites resulting from phase 1 and phase 2 biotransformations of xenobiotics

C de Bruyn Kops, M Šícho, A Mazzolari… - Chemical research in …, 2020 - ACS Publications
Predicting the structures of metabolites formed in humans can provide advantageous
insights for the development of drugs and other compounds. Here we present GLORYx …

Computational methods and tools to predict cytochrome P450 metabolism for drug discovery

JD Tyzack, J Kirchmair - Chemical biology & drug design, 2019 - Wiley Online Library
In this review, we present important, recent developments in the computational prediction of
cytochrome P450 (CYP) metabolism in the context of drug discovery. We discuss in silico …

Artificial intelligence in drug metabolism and excretion prediction: recent advances, challenges, and future perspectives

TTV Tran, H Tayara, KT Chong - Pharmaceutics, 2023 - mdpi.com
Drug metabolism and excretion play crucial roles in determining the efficacy and safety of
drug candidates, and predicting these processes is an essential part of drug discovery and …

[HTML][HTML] Machine learning for small molecule drug discovery in academia and industry

A Volkamer, S Riniker, E Nittinger, J Lanini… - Artificial Intelligence in …, 2023 - Elsevier
Academic and pharmaceutical industry research are both key for progresses in the field of
molecular machine learning. Despite common open research questions and long-term …

4mCpred-EL: An Ensemble Learning Framework for Identification of DNA N4-Methylcytosine Sites in the Mouse Genome

B Manavalan, S Basith, TH Shin, DY Lee, L Wei, G Lee - Cells, 2019 - mdpi.com
DNA N 4-methylcytosine (4mC) is one of the key epigenetic alterations, playing essential
roles in DNA replication, differentiation, cell cycle, and gene expression. To better …