GPCRdb: the G protein‐coupled receptor database–an introduction

C Munk, V Isberg, S Mordalski… - British Journal of …, 2016 - Wiley Online Library
GPCRs make up the largest family of human membrane proteins and of drug targets. Recent
advances in GPCR pharmacology and crystallography have shed new light on signal …

The ESTHER database on alpha/beta hydrolase fold proteins-An overview of recent developments

A Chatonnet, M Perochon, E Velluet… - Chemico-Biological …, 2023 - Elsevier
The ESTHER database, dedicated to ESTerases and alpha/beta-Hydrolase Enzymes and
Relatives (https://bioweb. supagro. inra. fr/ESTHER/general? what= index), offers online …

Protein function in precision medicine: deep understanding with machine learning

B Rost, P Radivojac, Y Bromberg - FEBS letters, 2016 - Wiley Online Library
Precision medicine and personalized health efforts propose leveraging complex molecular,
medical and family history, along with other types of personal data toward better life. We …

Ten simple rules for developing public biological databases

M Helmy, A Crits-Christoph… - PLoS computational …, 2016 - journals.plos.org
Biological databases are online libraries that contain structured information about living
organisms. These databases are indispensable research tools, as they provide convenient …

OMPdb: a global hub of beta-barrel outer membrane proteins

AF Roumia, KD Tsirigos, MC Theodoropoulou… - Frontiers in …, 2021 - frontiersin.org
OMPdb (www. ompdb. org) was introduced as a database for β-barrel outer membrane
proteins from Gram-negative bacteria in 2011 and then included 69,354 entries classified …

Entropy and variability: A second opinion by deep learning

DT Rademaker, LC Xue, PAC 't Hoen, G Vriend - Biomolecules, 2022 - mdpi.com
Background: Analysis of the distribution of amino acid types found at equivalent positions in
multiple sequence alignments has found applications in human genetics, protein …

Facilities that make the PDB data collection more powerful

J Lange, C Baakman, A Pistorius, E Krieger… - Protein …, 2020 - Wiley Online Library
We describe a series of databases and tools that directly or indirectly support biomedical
research on macromolecules, with focus on their applicability in protein structure …

Relationships of human α/β hydrolase fold proteins and other organophosphate-interacting proteins

N Lenfant, Y Bourne, P Marchot, A Chatonnet - Chemico-Biological …, 2016 - Elsevier
Organophosphates (OPs) are either found in nature or synthetized for use as pesticides,
flame retardants, neurotoxic warfare agents or drugs (cholinergic enhancers in Alzheimer's …

Biocuration in the structure–function linkage database: the anatomy of a superfamily

GL Holliday, SD Brown, E Akiva, D Mischel… - Database, 2017 - academic.oup.com
With ever-increasing amounts of sequence data available in both the primary literature and
sequence repositories, there is a bottleneck in annotating molecular function to a sequence …

[PDF][PDF] Entropy and Variability: A Second Opinion by Deep Learning. Biomolecules 2022, 12, 1740

DT Rademaker, LC Xue, PAC t Hoen, G Vriend - 2022 - academia.edu
Background: Analysis of the distribution of amino acid types found at equivalent positions in
multiple sequence alignments has found applications in human genetics, protein …