Synthesis and properties of size-expanded DNAs: toward designed, functional genetic systems

AT Krueger, H Lu, AHF Lee, ET Kool - Accounts of chemical …, 2007 - ACS Publications
We describe the design, synthesis, and properties of DNA-like molecules in which the base
pairs are expanded by benzo homologation. The resulting size-expanded genetic helices …

Expansion of genetic alphabets: designer nucleobases and their applications

SS Bag, A Banerjee, S Sinha - Synlett, 2024 - thieme-connect.com
All living things use DNA and RNA to store, retrieve, and transmit their genetic information.
The complementary Watson–Crick nucleobase-pairs (A/T and G/C base-pairs), have been …

Electronic parameters for charge transfer along DNA

LGD Hawke, G Kalosakas, C Simserides - The European Physical Journal …, 2010 - Springer
We systematically examine all the tight-binding parameters pertinent to charge transfer
along DNA. The π molecular structure of the four DNA bases (adenine, thymine, cytosine …

Effect of backbone flexibility on charge transfer rates in peptide nucleic acid duplexes

E Wierzbinski, A de Leon, X Yin, A Balaeff… - Journal of the …, 2012 - ACS Publications
Charge transfer (CT) properties are compared between peptide nucleic acid structures with
an aminoethylglycine backbone (aeg-PNA) and those with a γ-methylated backbone (γ …

Highly fluorescent purine-containing conjugated copolymers with tailored optoelectronic properties

CE O'Connell, S Sabury, JE Jenkins, GS Collier… - Polymer …, 2022 - pubs.rsc.org
Conjugated copolymers containing electron donor and acceptor units in their main chain
have emerged as promising materials for organic electronic devices due to their tunable …

Local aromaticity in natural nucleobases and their size-expanded benzo-fused derivatives

O Huertas, J Poater, M Fuentes-Cabrera… - The Journal of …, 2006 - ACS Publications
The influence of the insertion/addition of a benzene ring to the natural nucleic acid bases on
the local aromaticity of the so-called size-expanded (xN, with N being adenine, guanine …

Ab initio optical absorption spectra of size-expanded xDNA base assemblies

D Varsano, A Garbesi, R Di Felice - The Journal of Physical …, 2007 - ACS Publications
We present the results of time-dependent density functional theory calculations of the optical
absorption spectra of synthetic nucleobases and of their hydrogen-bonded and stacked …

Polymerase Amplification, Cloning, and Gene Expression of Benzo‐Homologous “yDNA” Base Pairs

J Chelliserrykattil, H Lu, AHF Lee, ET Kool - ChemBioChem, 2008 - Wiley Online Library
A widened DNA base‐pair architecture is studied in an effort to explore the possibility of
whether new genetic system designs might possess some of the functions of natural DNA. In …

How do size-expanded DNA nucleobases enhance duplex stability? Computational analysis of the hydrogen-bonding and stacking ability of xDNA bases

TL McConnell, SD Wetmore - The Journal of Physical Chemistry B, 2007 - ACS Publications
Computational chemistry (B3LYP, MP2) is used to study the properties of size-expanded
DNA nucleobases generated by inserting a benzene spacer into the natural nucleobases …

yDNA versus yyDNA pyrimidines: computational analysis of the effects of unidirectional ring expansion on the preferred sugar–base orientation, hydrogen-bonding …

P Sharma, LA Lait, SD Wetmore - Physical Chemistry Chemical …, 2013 - pubs.rsc.org
The properties of natural, y-and yy-pyrimidines are compared using computational (B3LYP,
MP2) methods. Ring expansion upon incorporation of benzene or naphthalene into the …