Quasispecies and virus

E Domingo, C Perales - European Biophysics Journal, 2018 - Springer
Quasispecies theory has been instrumental in the understanding of RNA virus population
dynamics because it considered for the first time mutation as an integral part of the …

The increasing impact of lethal mutagenesis of viruses

C Perales, I Gallego, AI De Ávila, ME Soria… - Future Medicinal …, 2019 - Taylor & Francis
Selection of viral mutants resistant to compounds used in therapy is a major determinant of
treatment failure, a problem akin to antibiotic resistance in bacteria. In this scenario …

Lethal mutagenesis of hepatitis C virus induced by favipiravir

AI De Ávila, I Gallego, ME Soria, J Gregori, J Quer… - PloS one, 2016 - journals.plos.org
Lethal mutagenesis is an antiviral approach that consists in extinguishing a virus by an
excess of mutations acquired during replication in the presence of a mutagen. Here we …

SARS-CoV-2 mutant spectra at different depth levels reveal an overwhelming abundance of low frequency mutations

B Martínez-González, ME Soria, L Vázquez-Sirvent… - Pathogens, 2022 - mdpi.com
Populations of RNA viruses are composed of complex and dynamic mixtures of variant
genomes that are termed mutant spectra or mutant clouds. This applies also to SARS-CoV …

Deep-sequencing reveals broad subtype-specific HCV resistance mutations associated with treatment failure

Q Chen, C Perales, ME Soria, D García-Cehic… - Antiviral Research, 2020 - Elsevier
A percentage of hepatitis C virus (HCV)-infected patients fail direct acting antiviral (DAA)-
based treatment regimens, often because of drug resistance-associated substitutions (RAS) …

Viral fitness: history and relevance for viral pathogenesis and antiviral interventions

E Domingo, AI de Avila, I Gallego… - Pathogens and …, 2019 - academic.oup.com
The quasispecies dynamics of viral populations (continuous generation of variant genomes
and competition among them) has as one of its frequent consequences variations in overall …

The apparent interferon resistance of transmitted HIV-1 is possibly a consequence of enhanced replicative fitness

E Sugrue, A Wickenhagen, N Mollentze, MA Aziz… - PLoS …, 2022 - journals.plos.org
HIV-1 transmission via sexual exposure is an inefficient process. When transmission does
occur, newly infected individuals are colonized by the descendants of either a single virion …

Synergism between remdesivir and ribavirin leads to SARS‐CoV‐2 extinction in cell culture

C García‐Crespo, AI de Ávila, I Gallego… - British journal of …, 2024 - Wiley Online Library
Background and Purpose There is a need for effective anti‐COVID‐19 treatments, mainly for
individuals at risk of severe disease such as the elderly and the immunosuppressed. Drug …

Quasispecies fitness partition to characterize the molecular status of a viral population. Negative effect of early ribavirin discontinuation in a chronically infected HEV …

J Gregori, S Colomer-Castell, C Campos… - International journal of …, 2022 - mdpi.com
The changes occurring in viral quasispecies populations during infection have been
monitored using diversity indices, nucleotide diversity, and several other indices to …

Characterization of multi-DAA resistance using a novel hepatitis C virus genotype 3a infectious culture system

C Fernandez-Antunez, K Wang, U Fahnøe… - Hepatology, 2023 - journals.lww.com
Conclusions: Baseline NS5A-RAS can compromise the efficacy of double-DAA
pangenotypic regimens for HCV genotype 3, and enhanced viral fitness can accelerate …