Increased accuracy of genomic predictions for growth under chronic thermal stress in rainbow trout by prioritizing variants from GWAS using imputed sequence data

GM Yoshida, JM Yáñez - Evolutionary applications, 2022 - Wiley Online Library
Through imputation of genotypes, genome‐wide association study (GWAS) and genomic
prediction (GP) using whole‐genome sequencing (WGS) data are cost‐efficient and feasible …

[HTML][HTML] Predicting bull fertility using genomic data and biological information

R Abdollahi-Arpanahi, G Morota… - Journal of Dairy Science, 2017 - Elsevier
The genomic prediction of unobserved genetic values or future phenotypes for complex
traits has revolutionized agriculture and human medicine. Fertility traits are undoubtedly …

Optimizing training population data and validation of genomic selection for economic traits in soft winter wheat

A Hoffstetter, A Cabrera, M Huang… - G3: Genes, Genomes …, 2016 - academic.oup.com
Genomic selection (GS) is a breeding tool that estimates breeding values (GEBVs) of
individuals based solely on marker data by using a model built using phenotypic and marker …

Impact of QTL minor allele frequency on genomic evaluation using real genotype data and simulated phenotypes in Japanese Black cattle

Y Uemoto, S Sasaki, T Kojima, Y Sugimoto… - BMC genetics, 2015 - Springer
Background Genetic variance that is not captured by single nucleotide polymorphisms
(SNPs) is due to imperfect linkage disequilibrium (LD) between SNPs and quantitative trait …

Effects of marker density and minor allele frequency on genomic prediction for growth traits in Chinese Simmental beef cattle

ZHU Bo, JJ Zhang, NIU Hong, G Long… - Journal of Integrative …, 2017 - Elsevier
Genomic selection has been demonstrated as a powerful technology to revolutionize animal
breeding. However, marker density and minor allele frequency can affect the predictive …

Whole genomic prediction of growth and carcass traits in a Chinese quality chicken population

Z Zhang, ZQ Xu, YY Luo, HB Zhang… - Journal of animal …, 2017 - academic.oup.com
By incorporating high-density markers into breeding value prediction models, the whole
genomic prediction (WGP) method can effectively accelerate genetic improvement in …

Population-tailored mock genome enables genomic studies in species without a reference genome

F Sabadin, HF Carvalho, G Galli… - Molecular Genetics and …, 2022 - Springer
Based on molecular markers, genomic prediction enables us to speed up breeding schemes
and increase the response to selection. There are several high-throughput genotyping …

Minor allele frequency in genomic prediction for growth traits in Braunvieh cattle

MZ Trujano-Chavez, JE Valerio-Hernández… - Revista bio …, 2021 - scielo.org.mx
The present research aimed to compare the effect of minor allele frequency (MAF) threshold
during the quality control process of genotypes, using single nucleotide polymorphisms …

The impact of QTL allele frequency distribution on the accuracy of genomic prediction

P Davoudi, R Abdollahi-Arpanahi… - Archives Animal …, 2018 - aab.copernicus.org
The accuracy of genomic prediction of quantitative traits based on single nucleotide
polymorphism (SNP) markers depends among other factors on the allele frequency …

Polymorphisms of pro-opiomelanocortin gene and the association with reproduction traits in chickens

K Liu, H Cao, X Dong, H Liu, Y Wen, H Mao… - Animal reproduction …, 2019 - Elsevier
Pro-opiomelanocortin (POMC) is a member of prohormone family and has important
functions in stress response, skin pigmentation, thermoregulation and reproduction. In this …