Phylogenomics of DNA topoisomerases: their origin and putative roles in the emergence of modern organisms

P Forterre, D Gadelle - Nucleic Acids Research, 2009 - academic.oup.com
Topoisomerases are essential enzymes that solve topological problems arising from the
double-helical structure of DNA. As a consequence, one should have naively expected to …

Structure and function of the GINS complex, a key component of the eukaryotic replisome

SA MacNeill - Biochemical Journal, 2010 - portlandpress.com
High-fidelity chromosomal DNA replication is fundamental to all forms of cellular life and
requires the complex interplay of a wide variety of essential and non-essential protein …

[图书][B] DNA and RNA modification enzymes: structure, mechanism, function and evolution

H Grosjean - 2009 - taylorfrancis.com
This volume is a timely and comprehensive description of the many facets of DNA and RNA
modification-editing processes and to some extent repair mechanisms. Each chapter offers …

Global phylogenomic analysis disentangles the complex evolutionary history of DNA replication in archaea

K Raymann, P Forterre… - Genome biology and …, 2014 - academic.oup.com
The archaeal machinery responsible for DNA replication is largely homologous to that of
eukaryotes and is clearly distinct from its bacterial counterpart. Moreover, it shows high …

[PDF][PDF] Expanded dataset reveals the emergence and evolution of DNA gyrase in Archaea

P Villain, R Catchpole, P Forterre… - Molecular biology …, 2022 - academic.oup.com
DNA gyrase is a type II topoisomerase with the unique capacity to introduce negative
supercoiling in DNA. In bacteria, DNA gyrase has an essential role in the homeostatic …

Archaeology of eukaryotic DNA replication

KS Makarova, EV Koonin - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
Recent advances in the characterization of the archaeal DNA replication system together
with comparative genomic analysis have led to the identification of several previously …

Archaeal DNA polymerase D but not DNA polymerase B is required for genome replication in Thermococcus kodakarensis

L Čuboňová, T Richardson, BW Burkhart… - Journal of …, 2013 - Am Soc Microbiol
Three evolutionarily distinct families of replicative DNA polymerases, designated
polymerase B (Pol B), Pol C, and Pol D, have been identified. Members of the Pol B family …

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

M Baudet, P Ortet, JC Gaillard, B Fernandez… - Molecular & Cellular …, 2010 - ASBMB
Deinococcaceae are a family of extremely radiation-tolerant bacteria that are currently
subjected to numerous studies aimed at understanding the molecular mechanisms for such …

Archaeal DNA replication

LM Kelman, Z Kelman - Annual review of genetics, 2014 - annualreviews.org
DNA replication is essential for all life forms. Although the process is fundamentally
conserved in the three domains of life, bioinformatic, biochemical, structural, and genetic …

The evolutionary history of archaeal MCM helicases: a case study of vertical evolution combined with hitchhiking of mobile genetic elements

M Krupovič, S Gribaldo, DH Bamford… - Molecular Biology and …, 2010 - academic.oup.com
Genes encoding DNA replication proteins have been frequently exchanged between cells
and mobile elements, such as viruses or plasmids. This raises potential problems to …