Post-translational modifications in proteins: resources, tools and prediction methods

S Ramazi, J Zahiri - Database, 2021 - academic.oup.com
Posttranslational modifications (PTMs) refer to amino acid side chain modification in some
proteins after their biosynthesis. There are more than 400 different types of PTMs affecting …

Glycoinformatics in the artificial intelligence era

D Bojar, F Lisacek - Chemical Reviews, 2022 - ACS Publications
Artificial intelligence (AI) methods have been and are now being increasingly integrated in
prediction software implemented in bioinformatics and its glycoscience branch known as …

Golgi glycosylation

P Stanley - Cold Spring Harbor perspectives in biology, 2011 - cshperspectives.cshlp.org
Glycosylation is a very common modification of protein and lipid, and most glycosylation
reactions occur in the Golgi. Although the transfer of initial sugar (s) to glycoproteins or …

A review of ensemble methods in bioinformatics

P Yang, Y Hwa Yang, BB Zhou… - Current …, 2010 - ingentaconnect.com
Ensemble learning is an intensively studied technique in machine learning and pattern
recognition. Recent work in computational biology has seen an increasing use of ensemble …

[HTML][HTML] Incorporating machine learning into established bioinformatics frameworks

N Auslander, AB Gussow, EV Koonin - International journal of molecular …, 2021 - mdpi.com
The exponential growth of biomedical data in recent years has urged the application of
numerous machine learning techniques to address emerging problems in biology and …

[HTML][HTML] In silico Platform for Prediction of N-, O- and C-Glycosites in Eukaryotic Protein Sequences

JS Chauhan, A Rao, GPS Raghava - PloS one, 2013 - journals.plos.org
Glycosylation is one of the most abundant and an important post-translational modification of
proteins. Glycosylated proteins (glycoproteins) are involved in various cellular biological …

[HTML][HTML] Artificial intelligence (AI) in rare diseases: is the future brighter?

S Brasil, C Pascoal, R Francisco, V dos Reis Ferreira… - Genes, 2019 - mdpi.com
The amount of data collected and managed in (bio) medicine is ever-increasing. Thus, there
is a need to rapidly and efficiently collect, analyze, and characterize all this information …

[HTML][HTML] Prediction of glycosylation sites using random forests

SE Hamby, JD Hirst - BMC bioinformatics, 2008 - Springer
Abstract Background Post translational modifications (PTMs) occur in the vast majority of
proteins and are essential for function. Prediction of the sequence location of PTMs …

[HTML][HTML] Recent advances in B-cell epitope prediction methods

Y El-Manzalawy, V Honavar - Immunome research, 2010 - Springer
Identification of epitopes that invoke strong responses from B-cells is one of the key steps in
designing effective vaccines against pathogens. Because experimental determination of …

Improving the prediction of petroleum reservoir characterization with a stacked generalization ensemble model of support vector machines

F Anifowose, J Labadin, A Abdulraheem - Applied Soft Computing, 2015 - Elsevier
The ensemble learning paradigm has proved to be relevant to solving most challenging
industrial problems. Despite its successful application especially in the Bioinformatics, the …