Tight-binding modeling of nucleic acid sequences: Interplay between various types of order or disorder and charge transport

K Lambropoulos, C Simserides - Symmetry, 2019 - mdpi.com
This review is devoted to tight-binding (TB) modeling of nucleic acid sequences like DNA
and RNA. It addresses how various types of order (periodic, quasiperiodic, fractal) or …

Charge transport in a double-stranded DNA: Effects of helical symmetry and long-range hopping

S Kundu, C Simserides - Physical Review E, 2024 - APS
Within a tight-binding framework, we examine conformation-dependent charge transport
properties of the DNA double-helix, including helical symmetry and the possibility of multiple …

Periodic, quasiperiodic, fractal, Kolakoski, and random binary polymers: Energy structure and carrier transport

K Lambropoulos, C Simserides - Physical Review E, 2019 - APS
We study periodic, quasiperiodic (Thue-Morse, Fibonacci, period doubling, Rudin-Shapiro),
fractal (Cantor, generalized Cantor), Kolakoski, and random binary sequences using a tight …

Electronic structure and carrier transfer in B-DNA monomer polymers and dimer polymers: Stationary and time-dependent aspects of a wire model versus an extended …

K Lambropoulos, M Chatzieleftheriou, A Morphis… - Physical Review E, 2016 - APS
We employ two tight-binding (TB) approaches to systematically study the electronic structure
and hole or electron transfer in B-DNA monomer polymers and dimer polymers made up of …

Electronic structure and charge transport properties of atomic carbon wires

K Lambropoulos, C Simserides - Physical Chemistry Chemical Physics, 2017 - pubs.rsc.org
Atomic carbon wires represent the ultimate one-atom-thick one-dimensional structure. We
use a Tight-binding (TB) approach to determine the electronic structure of polyynic and …

Effects of structural dynamics on charge carrier transfer in B-DNA: a combined MD and RT-TDDFT study

M Mantela, A Morphis, K Lambropoulos… - The Journal of …, 2021 - ACS Publications
Hole transfer along the axis of duplex DNA has been the focus of physical chemistry
research for decades, with implications in diverse fields, from nanotechnology to cell …

Spectral and transmission properties of periodic 1D tight-binding lattices with a generic unit cell: an analysis within the transfer matrix approach

K Lambropoulos, C Simserides - Journal of Physics …, 2018 - iopscience.iop.org
We report on the electronic structure, density of states and transmission properties of the
periodic one-dimensional tight-binding (TB) lattice with a single orbital per site and nearest …

RT-TDDFT study of hole oscillations in B-DNA monomers and dimers

M Tassi, A Morphis, K Lambropoulos… - Cogent Physics, 2017 - Taylor & Francis
Abstract We employ Real-Time Time-Dependent Density Functional Theory to study hole
oscillations within a B-DNA monomer (one base pair) or dimer (two base pairs). Placing the …

Twist-stretch profiles of DNA chains

M Zoli - Journal of Physics: Condensed Matter, 2017 - iopscience.iop.org
Helical molecules change their twist number under the effect of a mechanical load. We study
the twist-stretch relation for a set of short DNA molecules modeled by a mesoscopic …

Quasi-periodic and fractal polymers: Energy structure and carrier transfer

M Mantela, K Lambropoulos, M Theodorakou… - Materials, 2019 - mdpi.com
We study the energy structure and the coherent transfer of an extra electron or hole along
aperiodic polymers made of N monomers, with fixed boundaries, using B-DNA as our …