Electronic properties, hydrogen bonding, stacking, and cation binding of DNA and RNA bases

J Šponer, J Leszczynski… - … : Original Research on …, 2001 - Wiley Online Library
This review summarizes results concerning molecular interactions of nucleic acid bases as
revealed by advanced ab initio quantum chemical (QM) calculations published in last few …

Effects of the higher electron correlation correction on the calculated intermolecular interaction energies of benzene and naphthalene dimers: comparison between …

S Tsuzuki, T Uchimaru, K Matsumura, M Mikami… - Chemical Physics …, 2000 - Elsevier
Intermolecular interaction energies of parallel and T-shape benzene dimers and parallel
naphthalene dimer were calculated with MP2, MP3, MP4 (SDQ), MP4 (SDTQ), CCSD and …

Molecular interactions of nucleic acid bases. A review of quantum-chemical studies

J Šponer, P Hobza - Collection of Czechoslovak chemical …, 2003 - cccc.uochb.cas.cz
Ab initio quantum-chemical calculations with inclusion of electron correlation significantly
contributed to our understanding of molecular interactions of DNA and RNA bases. Some of …

Infrared spectra of pyrazine, pyrimidine and pyridazine in solid argon

S Breda, ID Reva, L Lapinski, MJ Nowak… - Journal of Molecular …, 2006 - Elsevier
The vibrational spectra of monomeric diazines (pyrazine, pyrimidine and pyridazine)
isolated in solid argon and of the neat crystalline phase of these compounds, at 10K, are …

Hydrogen bonding, stacking and cation binding of DNA bases

J Šponer, J Leszczynski, P Hobza - Journal of Molecular Structure …, 2001 - Elsevier
Ab initio quantum chemical calculations with inclusion of electron correlation effects
significantly contributed to our understanding of molecular interactions of DNA bases. Some …

Effect of basis set superposition error on the water dimer surface calculated at Hartree− Fock, Møller− Plesset, and density functional theory levels

S Simon, M Duran, JJ Dannenberg - The Journal of Physical …, 1999 - ACS Publications
Counterpoise (CP) corrected optimizations of water dimer using the D95++ (d, p) basis set at
various levels of MP and DFT are presented. The MP2 (full) calculations predict an …

C− H⊙⊙⊙ X Hydrogen Bonds of Acetylene, Ethylene, and Ethane with First-and Second-Row Hydrides

M Hartmann, SD Wetmore… - The Journal of Physical …, 2001 - ACS Publications
The structures and binding energies of a series of C− H⊙⊙⊙ X hydrogen-bonded
complexes involving acetylene, ethylene, and ethane as proton donors and the first-and …

Comparison of some dispersion-corrected and traditional functionals with CCSD (T) and MP2 ab initio methods: Dispersion, induction, and basis set superposition …

D Roy, M Marianski, NT Maitra… - The Journal of Chemical …, 2012 - pubs.aip.org
We compare dispersion and induction interactions for noble gas dimers and for Ne,
methane, and 2-butyne with HF and LiF using a variety of functionals (including some …

Electrostatic potential at atomic sites as a reactivity descriptor for hydrogen bonding. Complexes of monosubstituted acetylenes and ammonia

V Dimitrova, S Ilieva, B Galabov - The Journal of Physical …, 2002 - ACS Publications
The applicability of molecular electrostatic potential values at atomic sites as a reactivity
descriptor for the process of hydrogen bonding is assessed for a series of complexes …

Quantitative ranking of crystal packing modes by systematic calculations on potential energies and vibrational amplitudes of molecular dimers

A Gavezzotti - Journal of Chemical Theory and Computation, 2005 - ACS Publications
Quantum chemical calculations including electron correlation and calculations with the
density sums (Pixel) method have been performed on a variety of molecular dimers …