A systems view of nitrogen nutrient and metabolite responses in Arabidopsis
EA Vidal, RA Gutiérrez - Current opinion in plant biology, 2008 - Elsevier
Nitrogen (N) is an essential macronutrient available to plants mainly as nitrate in agricultural
soils. Besides its role as a nutrient, inorganic and organic N sources play key roles as …
soils. Besides its role as a nutrient, inorganic and organic N sources play key roles as …
The primary nitrate response: a multifaceted signalling pathway
Abstract Nitrate (NO3–) application strongly affects gene expression in plants. This
regulation is thought to be crucial for their adaptation in response to a changing nutritional …
regulation is thought to be crucial for their adaptation in response to a changing nutritional …
Systems approach identifies TGA1 and TGA4 transcription factors as important regulatory components of the nitrate response of Arabidopsis thaliana roots
Nitrate acts as a potent signal to control global gene expression in A rabidopsis. Using an
integrative bioinformatics approach we identified TGA 1 and TGA 4 as putative regulatory …
integrative bioinformatics approach we identified TGA 1 and TGA 4 as putative regulatory …
Temporal transcriptional logic of dynamic regulatory networks underlying nitrogen signaling and use in plants
This study exploits time, the relatively unexplored fourth dimension of gene regulatory
networks (GRNs), to learn the temporal transcriptional logic underlying dynamic nitrogen (N) …
networks (GRNs), to learn the temporal transcriptional logic underlying dynamic nitrogen (N) …
VirtualPlant: a software platform to support systems biology research
MS Katari, SD Nowicki, FF Aceituno, D Nero… - Plant …, 2010 - academic.oup.com
Data generation is no longer the limiting factor in advancing biological research. In addition,
data integration, analysis, and interpretation have become key bottlenecks and challenges …
data integration, analysis, and interpretation have become key bottlenecks and challenges …
Systems approaches map regulatory networks downstream of the auxin receptor AFB3 in the nitrate response of Arabidopsis thaliana roots
Auxin is a key phytohormone regulating central processes in plants. Although the
mechanism by which auxin triggers changes in gene expression is well understood, little is …
mechanism by which auxin triggers changes in gene expression is well understood, little is …
Integration of local and systemic signaling pathways for plant N responses
Nitrogen (N) is an essential macronutrient and a signal that has profound impacts on plant
growth and development. In order to cope with changing N regimes in the soil, plants have …
growth and development. In order to cope with changing N regimes in the soil, plants have …
Identification of Regulatory and Cargo Proteins of Endosomal and Secretory Pathways in Arabidopsis Thaliana by Proteomic Dissection*[S]
W Heard, J Sklenář, DFA Tome, S Robatzek… - Molecular & Cellular …, 2015 - ASBMB
The cell's endomembranes comprise an intricate, highly dynamic and well-organized
system. In plants, the proteins that regulate function of the various endomembrane …
system. In plants, the proteins that regulate function of the various endomembrane …
ConnecTF: A platform to integrate transcription factor–gene interactions and validate regulatory networks
Deciphering gene regulatory networks (GRNs) is both a promise and challenge of systems
biology. The promise lies in identifying key transcription factors (TFs) that enable an …
biology. The promise lies in identifying key transcription factors (TFs) that enable an …
Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root
Plants form the basis of the food webs that sustain animal life. Exogenous factors, such as
nutrients and sunlight, and endogenous factors, such as hormones, cooperate to control …
nutrients and sunlight, and endogenous factors, such as hormones, cooperate to control …