Controlling for false discoveries subsequently to large scale one‐way ANOVA testing in proteomics: Practical considerations
T Burger - Proteomics, 2023 - Wiley Online Library
In discovery proteomics, as well as many other “omic” approaches, the possibility to test for
the differential abundance of hundreds (or of thousands) of features simultaneously is …
the differential abundance of hundreds (or of thousands) of features simultaneously is …
Challenging Targets or Describing Mismatches? A Comment on Common Decoy Distribution by Madej et al.
L Etourneau, T Burger - Journal of Proteome Research, 2022 - ACS Publications
In their recent article, Madej et al.(Madej, D.; Wu, L.; Lam, H. Common Decoy Distributions
Simplify False Discovery Rate Estimation in Shotgun Proteomics. J. Proteome Res. 2022, 21 …
Simplify False Discovery Rate Estimation in Shotgun Proteomics. J. Proteome Res. 2022, 21 …
On the use of tandem mass spectra acquired from samples of evolutionarily distant organisms to validate methods for false discovery rate estimation
Estimating the false discovery rate (FDR) of peptide identifications is a key step in
proteomics data analysis, and many methods have been proposed for this purpose …
proteomics data analysis, and many methods have been proposed for this purpose …
Contrôle du FDR et imputation de valeurs manquantes pour l'analyse de données de protéomiques par spectrométrie de masse
L Etourneau - 2024 - theses.hal.science
La protéomique consiste en la caractérisation du protéome d'un échantillon biologique, c'est-
à-dire l'ensemble des protéines qu'il contient, et ce de la manière la plus exhaustive …
à-dire l'ensemble des protéines qu'il contient, et ce de la manière la plus exhaustive …
Transcriptome-informed reduction of protein databases: an analysis of how and when proteogenomics enhances eukaryotic proteomics
L Fancello, T Burger - bioRxiv, 2021 - biorxiv.org
Background Proteogenomics aims to identify variant or unknown proteins in bottom-up
proteomics, by searching transcriptome-or genome-derived custom protein databases …
proteomics, by searching transcriptome-or genome-derived custom protein databases …
[PDF][PDF] Applying FDR control subsequently to large scale one-way ANOVA testing in proteomics: practical considerations
T Burger - bioRxiv, 2022 - scholar.archive.org
In discovery proteomics, as well as many other “omic” approaches, more than two biological
conditions or group treatments can be compared in the one-way Analysis of Variance (OW …
conditions or group treatments can be compared in the one-way Analysis of Variance (OW …