Advances in the exon–intron database (EID)

V Shepelev, A Fedorov - Briefings in bioinformatics, 2006 - academic.oup.com
Investigation of exon–intron gene structures is a non-trivial task due to enormous
expansions of the eukaryotic genomes, great variety of gene forms, and the imperfectness in …

PIECE: a database for plant gene structure comparison and evolution

Y Wang, FM You, GR Lazo, MC Luo… - Nucleic acids …, 2013 - academic.oup.com
Gene families often show degrees of differences in terms of exon–intron structures
depending on their distinct evolutionary histories. Comparative analysis of gene structures is …

Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways

A Uzun, CM Leslin, A Abyzov, V Ilyin - Nucleic acids research, 2007 - academic.oup.com
SNPs located within the open reading frame of a gene that result in an alteration in the
amino acid sequence of the encoded protein [nonsynonymous SNPs (nsSNPs)] might …

The functional modulation of epigenetic regulators by alternative splicing

S Lois, N Blanco, M Martínez-Balbás, X de la Cruz - BMC genomics, 2007 - Springer
Background Epigenetic regulators (histone acetyltransferases, methyltransferases,
chromatin-remodelling enzymes, etc) play a fundamental role in the control of gene …

Friend, an integrated analytical front-end application for bioinformatics

A Abyzov, M Errami, CM Leslin, VA Ilyin - Bioinformatics, 2005 - academic.oup.com
Friend is a bioinformatics application designed for simultaneous analysis and visualization
of multiple structures and sequences of proteins and/or DNA/RNA. The application provides …

Structural bioinformatics: from the sequence to structure and function

M Wiltgen - Current Bioinformatics, 2009 - ingentaconnect.com
Proteins are the molecules of life which are involved in cellular processes. The functional
specificity of a protein is linked to its structure. A great section of bioinformatics deals with the …

ExDom: an integrated database for comparative analysis of the exon–intron structures of protein domains in eukaryotes

A Bhasi, P Philip, V Manikandan… - Nucleic acids …, 2009 - academic.oup.com
We have developed ExDom, a unique database for the comparative analysis of the exon–
intron structures of 96 680 protein domains from seven eukaryotic organisms (Homo …

SitEx: a computer system for analysis of projections of protein functional sites on eukaryotic genes

I Medvedeva, P Demenkov, N Kolchanov… - Nucleic acids …, 2012 - academic.oup.com
Search of interrelationships between the structural–functional protein organization and exon
structure of encoding gene provides insights into issues concerned with the function, origin …

Computer analysis of protein functional sites projection on exon structure of genes in Metazoa

IV Medvedeva, PS Demenkov, VA Ivanisenko - BMC genomics, 2015 - Springer
Background Study of the relationship between the structural and functional organization of
proteins and their coding genes is necessary for an understanding of the evolution of …

[HTML][HTML] ExonVisualiser–application for visualization exon units in 2D and 3D protein structures

M Piwowar, P Krzysztof, P Piotr - Bioinformation, 2012 - ncbi.nlm.nih.gov
The web application oriented on identification and visualization of protein regions encoded
by exons is presented. The Exon Visualiser can be used for visualisation on different levels …