Quality and quantity control of gene expression by nonsense-mediated mRNA decay

T Kurosaki, MW Popp, LE Maquat - Nature reviews Molecular cell …, 2019 - nature.com
Nonsense-mediated mRNA decay (NMD) is one of the best characterized and most
evolutionarily conserved cellular quality control mechanisms. Although NMD was first found …

Features and factors that dictate if terminating ribosomes cause or counteract nonsense-mediated mRNA decay

CM Embree, R Abu-Alhasan, G Singh - Journal of Biological Chemistry, 2022 - ASBMB
Nonsense-mediated mRNA decay (NMD) is a quality control pathway in eukaryotes that
continuously monitors mRNA transcripts to ensure truncated polypeptides are not produced …

A stem cell roadmap of ribosome heterogeneity reveals a function for RPL10A in mesoderm production

NR Genuth, Z Shi, K Kunimoto, V Hung, AF Xu… - Nature …, 2022 - nature.com
Recent findings suggest that the ribosome itself modulates gene expression. However,
whether ribosomes change composition across cell types or control cell fate remains …

Nonsense‐mediated mRNA decay: the challenge of telling right from wrong in a complex transcriptome

A Kishor, SE Fritz, JR Hogg - Wiley Interdisciplinary Reviews …, 2019 - Wiley Online Library
The nonsense‐mediated mRNA decay pathway selects and degrades its targets using a
dense network of RNA‐protein and protein–protein interactions. Together, these interactions …

New insights into no-go, non-stop and nonsense-mediated mRNA decay complexes

KT Powers, JYA Szeto, C Schaffitzel - Current Opinion in Structural Biology, 2020 - Elsevier
Highlights•Collided ribosomes form a unique disomal interface and are a hallmark of
slow/stalled translation.•Ribosome ubiquitination is triggered by ribosome collisions …

Ribosome-bound Upf1 forms distinct 80S complexes and conducts mRNA surveillance

R Ganesan, K Mangkalaphiban, RE Baker, F He… - RNA, 2022 - rnajournal.cshlp.org
Upf1, Upf2, and Upf3, the central regulators of nonsense-mediated mRNA decay (NMD),
appear to exercise their NMD functions while bound to elongating ribosomes, and evidence …

New insights into the interplay between the translation machinery and nonsense-mediated mRNA decay factors

E Raimondeau, JC Bufton… - Biochemical Society …, 2018 - portlandpress.com
Faulty mRNAs with a premature stop codon (PTC) are recognized and degraded by
nonsense-mediated mRNA decay (NMD). Recognition of a nonsense mRNA depends on …

UPF1—From mRNA Degradation to Human Disorders

J Staszewski, N Lazarewicz, J Konczak, I Migdal… - Cells, 2023 - mdpi.com
Up-frameshift protein 1 (UPF1) plays the role of a vital controller for transcripts, ready to react
in the event of an incorrect translation mechanism. It is well known as one of the key …

UPF1-mediated RNA decay—Danse Macabre in a cloud

D Lavysh, G Neu-Yilik - Biomolecules, 2020 - mdpi.com
Nonsense-mediated RNA decay (NMD) is the prototype example of a whole family of RNA
decay pathways that unfold around a common central effector protein called UPF1. While …

Assaying RNA structure with LASER-Seq

B Zinshteyn, D Chan, W England, C Feng… - Nucleic acids …, 2019 - academic.oup.com
Chemical probing methods are crucial to our understanding of the structure and function of
RNA molecules. The majority of chemical methods used to probe RNA structure report on …