Genomic selection in cereal breeding

CD Robertsen, RL Hjortshøj, LL Janss - Agronomy, 2019 - mdpi.com
Genomic Selection (GS) is a method in plant breeding to predict the genetic value of
untested lines based on genome-wide marker data. The method has been widely explored …

Optimizing plant breeding programs for genomic selection

LF Merrick, AW Herr, KS Sandhu, DN Lozada… - Agronomy, 2022 - mdpi.com
Plant geneticists and breeders have used marker technology since the 1980s in quantitative
trait locus (QTL) identification. Marker-assisted selection is effective for large-effect QTL but …

The modern plant breeding triangle: optimizing the use of genomics, phenomics, and enviromics data

J Crossa, R Fritsche-Neto… - Frontiers in plant …, 2021 - frontiersin.org
Continued increases in genetic gain demonstrate the success of established public and
private plant breeding programs. Nevertheless, in the last two decades, a growing body of …

Nonlinear kernels, dominance, and envirotyping data increase the accuracy of genome-based prediction in multi-environment trials

G Costa-Neto, R Fritsche-Neto, J Crossa - Heredity, 2021 - nature.com
Modern whole-genome prediction (WGP) frameworks that focus on multi-environment trials
(MET) integrate large-scale genomics, phenomics, and envirotyping data. However, the …

[PDF][PDF] Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data

AR Rogers, JB Holland - G3, 2022 - academic.oup.com
Technology advances have made possible the collection of a wealth of genomic,
environmental, and phenotypic data for use in plant breeding. Incorporation of …

Prediction of maize phenotypic traits with genomic and environmental predictors using gradient boosting frameworks

CC Westhues, GS Mahone, S da Silva… - Frontiers in plant …, 2021 - frontiersin.org
The development of crop varieties with stable performance in future environmental
conditions represents a critical challenge in the context of climate change. Environmental …

Deep kernel for genomic and near infrared predictions in multi-environment breeding trials

J Cuevas, O Montesinos-López… - G3: Genes …, 2019 - academic.oup.com
Kernel methods are flexible and easy to interpret and have been successfully used in
genomic-enabled prediction of various plant species. Kernel methods used in genomic …

Deep kernel and deep learning for genome-based prediction of single traits in multienvironment breeding trials

J Crossa, JWR Martini, D Gianola… - Frontiers in …, 2019 - frontiersin.org
Deep learning (DL) is a promising method for genomic-enabled prediction. However, the
implementation of DL is difficult because many hyperparameters (number of hidden layers …

GIS‐based G× E modeling of maize hybrids through enviromic markers engineering

RT Resende, A Xavier, PIT Silva… - New …, 2025 - Wiley Online Library
Through enviromics, precision breeding leverages innovative geotechnologies to customize
crop varieties to specific environments, potentially improving both crop yield and genetic …

Role of modelling in international crop research: overview and some case studies

M Reynolds, M Kropff, J Crossa, J Koo, G Kruseman… - Agronomy, 2018 - mdpi.com
Crop modelling has the potential to contribute to global food and nutrition security. This
paper briefly examines the history of crop modelling by international crop research centres …