Field programmable gate array applications—A scientometric review

J Ruiz-Rosero, G Ramirez-Gonzalez, R Khanna - Computation, 2019 - mdpi.com
Field Programmable Gate Array (FPGA) is a general purpose programmable logic device
that can be configured by a customer after manufacturing to perform from a simple logic gate …

A review on methods for detecting SNP interactions in high-dimensional genomic data

S Uppu, A Krishna, RP Gopalan - IEEE/ACM transactions on …, 2016 - ieeexplore.ieee.org
In this era of genome-wide association studies (GWAS), the quest for understanding the
genetic architecture of complex diseases is rapidly increasing more than ever before. The …

Niche harmony search algorithm for detecting complex disease associated high-order SNP combinations

S Tuo, J Zhang, X Yuan, Z He, Y Liu, Z Liu - Scientific reports, 2017 - nature.com
Genome-wide association study is especially challenging in detecting high-order disease-
causing models due to model diversity, possible low or even no marginal effect of the model …

High-performance computing to detect epistasis in genome scale data sets

A Upton, O Trelles, JA Cornejo-García… - Briefings in …, 2016 - academic.oup.com
It is becoming clear that most human diseases have a complex etiology that cannot be
explained by single nucleotide polymorphisms (SNPs) or simple additive combinations; the …

Fast search of third-order epistatic interactions on CPU and GPU clusters

C Ponte-Fernández… - … Journal of High …, 2020 - journals.sagepub.com
Genome-Wide Association Studies (GWASs), analyses that try to find a link between a given
phenotype (such as a disease) and genetic markers, have been growing in popularity in the …

A survey on swarm intelligence search methods dedicated to detection of high-order SNP interactions

S Tuo, H Chen, H Liu - IEEE Access, 2019 - ieeexplore.ieee.org
Detecting high-order single-nucleotide polymorphism (SNP) interactions is of great
importance for the discovery of pathogenic causes of human complex diseases. However, a …

Computing acceleration to genome-wide association study based on CPU/FPGA heterogeneous system

X Liu, R Wang, C Shi, C Zou, W Zhu - ACM SIGAPP Applied Computing …, 2024 - dl.acm.org
Genome Wide Association Study (GWAS) reveals the influence of single nucleotide
polymorphisms (SNP) and other genetic markers on the complex genetic disease traits …

Fast genome-wide third-order SNP interaction tests with information gain on a low-cost heterogeneous parallel FPGA-GPU computing architecture

L Wienbrandt, JC Kassens, M Hübenthal… - Procedia computer …, 2017 - Elsevier
Complex diseases may result from many genetic variants interacting with each other. For
this reason, genome-wide interaction studies (GWIS) are currently performed to detect …

Speed and accuracy improvement of higher-order epistasis detection on CUDA-enabled GPUs

D Jünger, C Hundt, JG Domínguez, B Schmidt - Cluster Computing, 2017 - Springer
The discovery of higher-order epistatic interactions is an important task in the field of
genome wide association studies which allows for the identification of complex interaction …

Fiuncho: a program for any-order epistasis detection in CPU clusters

C Ponte-Fernández, J González-Domínguez… - The Journal of …, 2022 - Springer
Epistasis can be defined as the statistical interaction of genes during the expression of a
phenotype. It is believed that it plays a fundamental role in gene expression, as individual …