Spatially resolved mass spectrometry at the single cell: recent innovations in proteomics and metabolomics

MJ Taylor, JK Lukowski… - Journal of the American …, 2021 - ACS Publications
Biological systems are composed of heterogeneous populations of cells that
intercommunicate to form a functional living tissue. Biological function varies greatly across …

Enabling technologies for personalized and precision medicine

D Ho, SR Quake, ERB McCabe, WJ Chng… - Trends in …, 2020 - cell.com
Individualizing patient treatment is a core objective of the medical field. Reaching this
objective has been elusive owing to the complex set of factors contributing to both disease …

Nanopore long-read RNAseq reveals widespread transcriptional variation among the surface receptors of individual B cells

A Byrne, AE Beaudin, HE Olsen, M Jain, C Cole… - Nature …, 2017 - nature.com
Understanding gene regulation and function requires a genome-wide method capable of
capturing both gene expression levels and isoform diversity at the single-cell level. Short …

Dual blockade of PD-1 and CTLA-4 combined with tumor vaccine effectively restores T-cell rejection function in tumors

J Duraiswamy, KM Kaluza, GJ Freeman, G Coukos - Cancer research, 2013 - AACR
Tumor progression is facilitated by regulatory T cells (Treg) and restricted by effector T cells.
In this study, we document parallel regulation of CD8+ T cells and Foxp3+ Tregs by …

Cancer stem cell definitions and terminology: the devil is in the details

P Valent, D Bonnet, R De Maria, T Lapidot… - Nature Reviews …, 2012 - nature.com
The cancer stem cell (CSC) concept has important therapeutic implications, but its
investigation has been hampered both by a lack of consistency in the terms used for these …

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

B Bodenmiller, ER Zunder, R Finck, TJ Chen… - Nature …, 2012 - nature.com
Mass cytometry facilitates high-dimensional, quantitative analysis of the effects of bioactive
molecules on human samples at single-cell resolution, but instruments process only one …

Single cell analysis: the new frontier in 'omics'

D Wang, S Bodovitz - Trends in biotechnology, 2010 - cell.com
Cellular heterogeneity that arises from stochastic expression of genes, proteins and
metabolites is a fundamental principle of cell biology, but single cell analysis has been …

Cell line-based platforms to evaluate the therapeutic efficacy of candidate anticancer agents

SV Sharma, DA Haber, J Settleman - Nature reviews cancer, 2010 - nature.com
Efforts to discover new cancer drugs and predict their clinical activity are limited by the fact
that laboratory models to test drug efficacy do not faithfully recapitulate this complex disease …

Web‐based analysis and publication of flow cytometry experiments

N Kotecha, PO Krutzik, JM Irish - Current protocols in cytometry, 2010 - Wiley Online Library
Cytobank is a Web‐based application for storage, analysis, and sharing of flow cytometry
experiments. Researchers use a Web browser to log in and use a wide range of tools …

Multi-domain translation between single-cell imaging and sequencing data using autoencoders

KD Yang, A Belyaeva, S Venkatachalapathy… - Nature …, 2021 - nature.com
The development of single-cell methods for capturing different data modalities including
imaging and sequencing has revolutionized our ability to identify heterogeneous cell states …