The chromosome folding problem and how cells solve it

J Dekker, LA Mirny - Cell, 2024 - cell.com
Every cell must solve the problem of how to fold its genome. We describe how the folded
state of chromosomes is the result of the combined activity of multiple conserved …

Chromosomal domain formation by archaeal SMC, a roadblock protein, and DNA structure

K Yamaura, N Takemata, M Kariya, S Ishino… - bioRxiv, 2024 - biorxiv.org
Structural maintenance of chromosomes (SMC) complexes fold genomes by extruding DNA
loops. In eukaryotes, loop-extruding SMC complexes form topologically associating domains …

Hi-C/3C-seq Data Analysis for Prokaryotic Genomes with HiC-Pro

N Takemata - Computational Methods for 3D Genome Analysis, 2024 - Springer
Hi-C and 3C-seq are powerful tools to study the 3D genomes of bacteria and archaea,
whose small cell sizes and growth conditions are often intractable to detailed microscopic …