Determinants of genetic diversity

H Ellegren, N Galtier - Nature Reviews Genetics, 2016 - nature.com
Genetic polymorphism varies among species and within genomes, and has important
implications for the evolution and conservation of species. The determinants of this variation …

Tandem repeats mediating genetic plasticity in health and disease

AJ Hannan - Nature Reviews Genetics, 2018 - nature.com
Accumulating evidence suggests that many classes of DNA repeats exhibit attributes that
distinguish them from other genetic variants, including the fact that they are more liable to …

Genome-wide profiling of heritable and de novo STR variations

T Willems, D Zielinski, J Yuan, A Gordon, M Gymrek… - Nature …, 2017 - nature.com
Short tandem repeats (STRs) are highly variable elements that play a pivotal role in multiple
genetic diseases, population genetics applications, and forensic casework. However, it has …

Mining and development of novel SSR markers using next generation sequencing (NGS) data in plants

S Taheri, T Lee Abdullah, MR Yusop, MM Hanafi… - Molecules, 2018 - mdpi.com
Microsatellites, or simple sequence repeats (SSRs), are one of the most informative and
multi-purpose genetic markers exploited in plant functional genomics. However, the …

Selective nanopore sequencing of human BRCA1 by Cas9-assisted targeting of chromosome segments (CATCH)

T Gabrieli, H Sharim, D Fridman, N Arbib… - Nucleic acids …, 2018 - academic.oup.com
Next generation sequencing (NGS) is challenged by structural and copy number variations
larger than the typical read length of several hundred bases. Third-generation sequencing …

A genomic view of short tandem repeats

M Gymrek - Current opinion in genetics & development, 2017 - Elsevier
Short tandem repeats (STRs) are some of the fastest mutating loci in the genome. Tools for
accurately profiling STRs from high-throughput sequencing data have enabled genome …

Accurate sequencing of DNA motifs able to form alternative (non-B) structures

MH Weissensteiner, MA Cremona, WM Guiblet… - Genome …, 2023 - genome.cshlp.org
Approximately 13% of the human genome at certain motifs have the potential to form
noncanonical (non-B) DNA structures (eg, G-quadruplexes, cruciforms, and Z-DNA), which …

Identification of SNP and SSR markers in finger millet using next generation sequencing technologies

D Gimode, DA Odeny, EP de Villiers, S Wanyonyi… - PLoS one, 2016 - journals.plos.org
Finger millet is an important cereal crop in eastern Africa and southern India with excellent
grain storage quality and unique ability to thrive in extreme environmental conditions. Since …

Y-LineageTracker: a high-throughput analysis framework for Y-chromosomal next-generation sequencing data

H Chen, Y Lu, D Lu, S Xu - BMC bioinformatics, 2021 - Springer
Abstract Background Y-chromosome DNA (Y-DNA) has been used for tracing paternal
lineages and offers a clear path from an individual to a known, or likely, direct paternal …

Genome-wide characterization of microsatellite DNA in fishes: Survey and analysis of their abundance and frequency in genome-specific regions

Y Lei, Y Zhou, M Price, Z Song - BMC genomics, 2021 - Springer
Background Microsatellite repeats are ubiquitous in organism genomes and play an
important role in the chromatin organization, regulation of gene activity, recombination and …