Structure and mutations of SARS-CoV-2 spike protein: a focused overview

R Mehra, KP Kepp - ACS Infectious Diseases, 2021 - ACS Publications
The spike protein (S-protein) of SARS-CoV-2, the protein that enables the virus to infect
human cells, is the basis for many vaccines and a hotspot of concerning virus evolution …

[PDF][PDF] Effects of cryo-EM cooling on structural ensembles

LV Bock, H Grubmuller - Biophysical Journal, 2022 - cell.com
The recent revolution in cryo electron microscopy (cryo-EM) allows the determination of
structures of macromolecular complexes at atomic resolution. Cryo-EM also provides …

Understanding familial Alzheimer's disease: the fit‐stay‐trim mechanism of γ‐secretase

R Mehra, KP Kepp - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
Understanding Alzheimer's disease is a central challenge of the 21st century, as the disease
affects tens of millions of people and kills a million people each year, with current drugs …

Towards interpretable Cryo-EM: disentangling latent spaces of molecular conformations

DA Klindt, A Hyvärinen, A Levy, N Miolane… - Frontiers in Molecular …, 2024 - frontiersin.org
Molecules are essential building blocks of life and their different conformations (ie, shapes)
crucially determine the functional role that they play in living organisms. Cryogenic Electron …

Enzyme-substrate hybrid β-sheet controls geometry and water access to the γ-secretase active site

SY Chen, LP Feilen, L Chávez-Gutiérrez… - Communications …, 2023 - nature.com
Abstract γ-Secretase is an aspartyl intramembrane protease that cleaves the amyloid
precursor protein (APP) involved in Alzheimer's disease pathology and other …

Side-by-side comparison of Notch-and C83 binding to γ-secretase in a complete membrane model at physiological temperature

B Dehury, N Tang, R Mehra, TL Blundell, KP Kepp - RSC advances, 2020 - pubs.rsc.org
γ-Secretase cleaves the C99 fragment of the amyloid precursor protein, leading to formation
of aggregated β-amyloid peptide central to Alzheimer's disease, and Notch, essential for cell …

A thermodynamic investigation of amyloid precursor protein processing by human γ-secretase

X Lu, J Huang - Communications Biology, 2022 - nature.com
Human γ-secretase cleaves the transmembrane domains (TMDs) of amyloid precursor
protein (APP) into pathologically relevant amyloid-β peptides (Aβs). The detailed …

A computer-simulated mechanism of familial Alzheimer's disease: Mutations enhance thermal dynamics and favor looser substrate-binding to γ-secretase

B Dehury, AK Somavarapu, KP Kepp - Journal of Structural Biology, 2020 - Elsevier
The 4-subunit intramembrane protease complex γ-secretase cleaves many substrates
including fragments of the β-amyloid precursor protein (APP), leading to formation of Aβ …

Stability and expression of SARS-CoV-2 spike-protein mutations

KT Bæk, R Mehra, KP Kepp - Molecular and Cellular Biochemistry, 2023 - Springer
Protein fold stability likely plays a role in SARS-CoV-2 S-protein evolution, together with
ACE2 binding and antibody evasion. While few thermodynamic stability data are available …

Modelling SARS-CoV-2 spike-protein mutation effects on ACE2 binding

S Thakur, RK Verma, KP Kepp, R Mehra - Journal of Molecular Graphics …, 2023 - Elsevier
The binding affinity of the SARS-CoV-2 spike (S)-protein to the human membrane protein
ACE2 is critical for virus function. Computational structure-based screening of new S-protein …