Transfer and functional consequences of dietary microRNAs in vertebrates: concepts in search of corroboration: negative results challenge the hypothesis that dietary …
KW Witwer, KD Hirschi - Bioessays, 2014 - Wiley Online Library
If validated, diet‐derived foreign microRNA absorption and function in consuming
vertebrates would drastically alter our understanding of nutrition and ecology. RNA …
vertebrates would drastically alter our understanding of nutrition and ecology. RNA …
Proteogenomics: integrating next-generation sequencing and mass spectrometry to characterize human proteomic variation
GM Sheynkman, MR Shortreed… - Annual review of …, 2016 - annualreviews.org
Mass spectrometry–based proteomics has emerged as the leading method for detection,
quantification, and characterization of proteins. Nearly all proteomic workflows rely on …
quantification, and characterization of proteins. Nearly all proteomic workflows rely on …
Challenges in defining the role of intron retention in normal biology and disease
RNA sequencing has revealed a striking diversity in transcriptomic complexity, to which
alternative splicing is a major contributor. Intron retention (IR) is a conserved form of …
alternative splicing is a major contributor. Intron retention (IR) is a conserved form of …
Proteomic validation of transcript isoforms, including those assembled from RNA-Seq data
Human proteome analysis now requires an understanding of protein isoforms. We recently
published the PG Nexus pipeline, which facilitates high confidence validation of exons and …
published the PG Nexus pipeline, which facilitates high confidence validation of exons and …
A tool for integrating genetic and mass spectrometry‐based peptide data: Proteogenomics Viewer: PV: A genome browser‐like tool, which includes MS data …
In this manuscript we describe Proteogenomics Viewer, a web‐based tool that collects MS
peptide identification, indexes to genomic sequence and structure, assigns exon usage …
peptide identification, indexes to genomic sequence and structure, assigns exon usage …
A predicted novel protein isoform of HOXA9
JWD Wang, GL Gross, ER Andrew, A Padovan… - Leukemia Research, 2019 - Elsevier
2. Methods The alternate protein isoform in mouse was previously predicted [16]. For
verification of other species, sequence data were downloaded from ENSEMBL and NCBI …
verification of other species, sequence data were downloaded from ENSEMBL and NCBI …