Spatial transcriptomics of the respiratory system

S Megas, A Wilbrey-Clark, A Maartens… - Annual Review of …, 2024 - annualreviews.org
Over the last decade, single-cell genomics has revealed remarkable heterogeneity and
plasticity of cell types in the lungs and airways. The challenge now is to understand how …

[HTML][HTML] Hedgehog Signaling Pathway in Fibrosis and Targeted Therapies

Y Hu, L Peng, X Zhuo, C Yang, Y Zhang - Biomolecules, 2024 - mdpi.com
Hedgehog (Hh) signaling is a well-established developmental pathway; it is crucial for early
embryogenesis, cell differentiation, and damage-driven regeneration. It is being increasingly …

[PDF][PDF] Teatime: epigallocatechin gallate targets fibroblast–epithelial cell crosstalk to combat lung fibrosis

O Burgy, M Königshoff - Journal of Clinical Investigation, 2024 - jci.org
Epigallocatechin gallate (EGCG) is a polyphenol plant metabolite abundant in tea that has
demonstrated antifibrotic properties in the lung. In this issue of the JCI, Cohen, Brumwell …

Changes in ratio of microRNA-29 to microRNA-199 expression Coordinate Mesenchymal Stem Cell Induced Repair of Bleomycin-induced Pulmonary Injury in Aged …

SJ Elliot, D Anderson-Terhune, B Roos… - … Therapy Nucleic Acids, 2025 - cell.com
Our previous work demonstrated the anti-fibrotic effects of infusion of adipose-derived
mesenchymal stem cells (ASCs) to prevent or repair bleomycin-induced lung injury. The …

ANGPTL4 mediated mesothelial-mesenchymal transition in pulmonary fibrosis: a potential therapeutic target

Y Xia, F Zhou, H Hui, L Dai, S Ouyang - Journal of Translational Medicine, 2024 - Springer
Background Glycolysis plays a major role in progression of idiopathic pulmonary fibrosis
(IPF). Here, we aim to explore the predictive signature based on glycolysis-related genes for …

[HTML][HTML] Novel Integration of Spatial and Single-Cell Omics Data Sets Enables Deeper Insights into IPF Pathogenesis

F Wang, L Jin, X Wang, B Cui, Y Yang, L Duggan… - Proteomes, 2025 - mdpi.com
Idiopathic pulmonary fibrosis (IPF) is a progressive lung disease characterized by repetitive
alveolar injuries with excessive deposition of extracellular matrix (ECM) proteins. A crucial …

High-parametric protein maps reveal the spatial organization in early-developing human lung

S Sariyar, A Sountoulidis, JN Hansen… - Nature …, 2024 - nature.com
The respiratory system, including the lungs, is essential for terrestrial life. While recent
research has advanced our understanding of lung development, much still relies on animal …

Spatiotemporal transcriptomic niches of complement pathway and serine protease inhibitor activation in aging and infection

F Kern, V Wagner, V Wahl, N Ludwig, S Graf, J Amand… - bioRxiv, 2024 - biorxiv.org
Aging is a multifactorial and complex physiological process, affecting every organ with
characteristic manifestations. Understanding the molecular mechanisms that drive aging …

STExplorer: Navigating the Micro-Geography of Spatial Omics Data

E Zormpas, NI Vlachogiannis, A Resteu, A Unsworth… - bioRxiv, 2025 - biorxiv.org
Spatial transcriptomics (ST) has the potential to provide unprecedented insights into gene
expression across tissue architecture, but existing analytical methods often overlook the full …

The MUC5B promoter variant results in proteomic changes in the non-fibrotic lung

JA HERRERA, M Maslanka, RZ Blumhagen… - bioRxiv, 2024 - biorxiv.org
The gain-of-function MUC5B promoter variant is the dominant risk factor for the development
of idiopathic pulmonary fibrosis (IPF). However, its impact on protein expression in both non …