Microbiome rescue: directing resilience of environmental microbial communities
A Shade - Current Opinion in Microbiology, 2023 - Elsevier
Highlights•Microbiome management can maintain functions for systems facing climate
change.•Microbiome rescue reintroduces functional members lost to disturbance.•Rescue …
change.•Microbiome rescue reintroduces functional members lost to disturbance.•Rescue …
Integrating viral metagenomics into an ecological framework
Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses,
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …
within both environmental (eg, terrestrial and aquatic) and host-associated (eg, plants and …
Life history strategies among soil bacteria—dichotomy for few, continuum for many
Study of life history strategies may help predict the performance of microorganisms in nature
by organizing the complexity of microbial communities into groups of organisms with similar …
by organizing the complexity of microbial communities into groups of organisms with similar …
HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi
Background Linking the identity of wild microbes with their ecophysiological traits and
environmental functions is a key ambition for microbial ecologists. Of many techniques that …
environmental functions is a key ambition for microbial ecologists. Of many techniques that …
Plant-associated fungi support bacterial resilience following water limitation
R Hestrin, M Kan, M Lafler, J Wollard… - The ISME …, 2022 - academic.oup.com
Drought disrupts soil microbial activity and many biogeochemical processes. Although plant-
associated fungi can support plant performance and nutrient cycling during drought, their …
associated fungi can support plant performance and nutrient cycling during drought, their …
Stable-isotope-informed, genome-resolved metagenomics uncovers potential cross-kingdom interactions in rhizosphere soil
The functioning, health, and productivity of soil are intimately tied to a complex network of
interactions, particularly in plant root-associated rhizosphere soil. We conducted a stable …
interactions, particularly in plant root-associated rhizosphere soil. We conducted a stable …
Quantitative stable-isotope probing (qSIP) with metagenomics links microbial physiology and activity to soil moisture in Mediterranean-climate grassland ecosystems
The growth and physiology of soil microorganisms, which play vital roles in biogeochemical
cycling, are shaped by both current and historical soil environmental conditions. Here, we …
cycling, are shaped by both current and historical soil environmental conditions. Here, we …
Soil fungi remain active and invest in storage compounds during drought independent of future climate conditions
Microbial growth is central to soil carbon cycling. However, how microbial communities grow
under climate change is still largely unexplored. Here we use a unique field experiment …
under climate change is still largely unexplored. Here we use a unique field experiment …
Metagenomics and quantitative stable isotope probing offer insights into metabolism of polycyclic aromatic hydrocarbon degraders in chronically polluted seawater
Bacterial biodegradation is a significant contributor to remineralization of polycyclic aromatic
hydrocarbons (PAHs)—toxic and recalcitrant components of crude oil as well as by-products …
hydrocarbons (PAHs)—toxic and recalcitrant components of crude oil as well as by-products …
HT-SIP: A semi-automated Stable Isotope Probing pipeline identifies interactions in the hyphosphere of arbuscular mycorrhizal fungi
Background Linking the identity of wild microbes with their ecophysiological traits and
environmental functions is a key ambition for microbial ecologists. Of many techniques that …
environmental functions is a key ambition for microbial ecologists. Of many techniques that …