Review on the computational genome annotation of sequences obtained by next-generation sequencing

GF Ejigu, J Jung - Biology, 2020 - mdpi.com
Simple Summary Due to the development of high-throughput sequencing technologies,
computational genome annotation of sequences has become one of the principal research …

Transcriptional activity of the giant barrel sponge, Xestospongia muta Holobiont: molecular evidence for metabolic interchange

CL Fiore, M Labrie, JK Jarett, MP Lesser - Frontiers in microbiology, 2015 - frontiersin.org
Compared to our understanding of the taxonomic composition of the symbiotic microbes in
marine sponges, the functional diversity of these symbionts is largely unknown. Furthermore …

Comparative transcriptome profiling of resistant and susceptible rice genotypes in response to the seedborne pathogen Fusarium fujikuroi

S Matić, P Bagnaresi, C Biselli, L Orru'… - BMC genomics, 2016 - Springer
Background Fusarium fujikuroi is the causal agent of bakanae, the most significant seed-
borne disease of rice. Molecular mechanisms regulating defence responses of rice towards …

Sma3s: a universal tool for easy functional annotation of proteomes and transcriptomes

CS Casimiro‐Soriguer, A Muñoz‐Mérida… - …, 2017 - Wiley Online Library
The current cheapening of next‐generation sequencing has led to an enormous growth in
the number of sequenced genomes and transcriptomes, allowing wet labs to get the …

RNA-seq analysis in forest tree species: bioinformatic problems and solutions

U Lopez de Heredia, JL Vázquez-Poletti - Tree Genetics & Genomes, 2016 - Springer
Direct sequencing of RNA (RNA-seq) using next-generation sequencing platforms has
allowed a growing number of gene expression studies focused on forest trees in the last 5 …

Identification of novel drought-responsive microRNAs and trans-acting siRNAs from Sorghum bicolor (L.) Moench by high-throughput sequencing analysis

A Katiyar, S Smita, SK Muthusamy… - Frontiers in plant …, 2015 - frontiersin.org
Small non-coding RNAs (sRNAs) namely microRNAs (miRNAs) and trans-acting small
interfering RNAs (tasi-RNAs) play a crucial role in post-transcriptional regulation of gene …

Exploring the biologically active metabolites produced by Bacillus cereus for plant growth promotion, heat stress tolerance, and resistance to bacterial soft rot in …

SH Tsai, YC Hsiao, PE Chang, CE Kuo, MC Lai… - Metabolites, 2023 - mdpi.com
Eight gene clusters responsible for synthesizing bioactive metabolites associated with plant
growth promotion were identified in the Bacillus cereus strain D1 (BcD1) genome using the …

Examining the Transcriptomic and Biochemical Signatures of Bacillus subtilis Strains: Impacts on Plant Growth and Abiotic Stress Tolerance

PE Chang, YH Wu, CY Tai, IH Lin, WD Wang… - International Journal of …, 2023 - mdpi.com
Rhizobacteria from various ecological niches display variations in physiological
characteristics. This study investigates the transcriptome profiling of two Bacillus subtilis …

Development of Genomic Microsatellite Markers in Carthamus tinctorius L. (Safflower) Using Next Generation Sequencing and Assessment of Their Cross-Species …

H Ambreen, S Kumar, MT Variath, G Joshi, S Bali… - PloS one, 2015 - journals.plos.org
Background Safflower (Carthamus tinctorius L.), an Asteraceae member, yields high quality
edible oil rich in unsaturated fatty acids and is resilient to dry conditions. The crop holds …

Comparison of the Transcriptomes of Ginger (Zingiber officinale Rosc.) and Mango Ginger (Curcuma amada Roxb.) in Response to the Bacterial Wilt Infection

D Prasath, R Karthika, NT Habeeba, EJ Suraby… - PLoS …, 2014 - journals.plos.org
Bacterial wilt in ginger (Zingiber officinale Rosc.) caused by Ralstonia solanacearum is one
of the most important production constraints in tropical, sub-tropical and warm temperature …