IAP family proteins—suppressors of apoptosis

QL Deveraux, JC Reed - Genes & development, 1999 - genesdev.cshlp.org
Apoptosis is a physiological cell suicide program that is critical for the development and
maintenance of healthy tissues. Dysregulation of cell death pathways occur in cancer …

Multiple sequence alignment with Clustal X

F Jeanmougin, JD Thompson, M Gouy… - Trends in biochemical …, 1998 - cell.com
Figure 1 Screenshot of a session with Clustal X in split-window mode for profile alignment.
Archaeal TFIIB sequences (lower window) are aligned with prealigned eukaryotic TFIIBs …

Clustal omega

F Sievers, DG Higgins - Current protocols in bioinformatics, 2014 - Wiley Online Library
Clustal Omega is a package for making multiple sequence alignments of amino acid or
nucleotide sequences, quickly and accurately. It is a complete upgrade and rewrite of earlier …

Learning spatial structures of proteins improves protein–protein interaction prediction

B Song, X Luo, X Luo, Y Liu, Z Niu… - Briefings in …, 2022 - academic.oup.com
Spatial structures of proteins are closely related to protein functions. Integrating protein
structures improves the performance of protein–protein interaction (PPI) prediction …

Clustal W and Clustal X version 2.0

MA Larkin, G Blackshields, NP Brown, R Chenna… - …, 2007 - academic.oup.com
The Clustal W and Clustal X multiple sequence alignment programs have been completely
rewritten in C++. This will facilitate the further development of the alignment algorithms in the …

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix …

JD Thompson, DG Higgins, TJ Gibson - Nucleic acids research, 1994 - academic.oup.com
The sensitivity of the commonly used progressive multiple sequence alignment method has
been greatly improved for the alignment of divergent protein sequences. Firstly, individual …

A novel angiotensin-converting enzyme–related carboxypeptidase (ACE2) converts angiotensin I to angiotensin 1-9

M Donoghue, F Hsieh, E Baronas, K Godbout… - Circulation …, 2000 - Am Heart Assoc
ACE2, the first known human homologue of angiotensin-converting enzyme (ACE), was
identified from 5′ sequencing of a human heart failure ventricle cDNA library. ACE2 has an …

[图书][B] Biological sequence analysis: probabilistic models of proteins and nucleic acids

R Durbin, SR Eddy, A Krogh, G Mitchison - 1998 - books.google.com
Probabilistic models are becoming increasingly important in analysing the huge amount of
data being produced by large-scale DNA-sequencing efforts such as the Human Genome …

Multiple sequence alignment using ClustalW and ClustalX

JD Thompson, TJ Gibson… - Current protocols in …, 2003 - Wiley Online Library
The Clustal programs are widely used for carrying out automatic multiple alignment of
nucleotide or amino acid sequences. The most familiar version is ClustalW, which uses a …

Identification of genes that are associated with DNA repeats in prokaryotes

R Jansen, JDA Embden, W Gaastra… - Molecular …, 2002 - Wiley Online Library
Using in silico analysis we studied a novel family of repetitive DNA sequences that is
present among both domains of the prokaryotes (Archaea and Bacteria), but absent from …