Methodology-centered review of molecular modeling, simulation, and prediction of SARS-CoV-2

K Gao, R Wang, J Chen, L Cheng, J Frishcosy… - Chemical …, 2022 - ACS Publications
Despite tremendous efforts in the past two years, our understanding of severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), virus–host interactions, immune …

[HTML][HTML] Carbon nanoparticle-based COVID-19 biosensors

F Mirzadeh-rafie, F Rahbarizadeh, N Shoaei… - Sensors …, 2023 - Elsevier
Abstract Coronavirus disease (COVID-19) is a new emerged contagious human-to-human
infection that broke out in early December 2019, threatens global public health and causing …

Impact of Early Pandemic Stage Mutations on Molecular Dynamics of SARS-CoV-2 Mpro

O Sheik Amamuddy, GM Verkhivker… - Journal of chemical …, 2020 - ACS Publications
A new coronavirus (SARS-CoV-2) is a global threat to world health and economy. Its dimeric
main protease (Mpro), which is required for the proteolytic cleavage of viral precursor …

Interaction of selected terpenoids with two SARS-CoV-2 key therapeutic targets: An in silico study through molecular docking and dynamics simulations

SV Giofrè, E Napoli, N Iraci, A Speciale… - Computers in Biology …, 2021 - Elsevier
The outbreak of COVID-19 disease caused by SARS-CoV-2, along with the lack of targeted
medicaments, forced the scientific world to search for new antiviral formulations. In the …

In Silico molecular docking and dynamic analysis of natural compounds against major non-structural proteins of SARS-COV-2

MU Rehman, A Ali, R Ansar, A Arafah… - Journal of …, 2023 - Taylor & Francis
COVID-19 has infected millions and significantly affected the global economy and
healthcare systems. Despite continuous lockdowns, symptomatic management with …

In silico discovery of multi-targeting inhibitors for the COVID-19 treatment by molecular docking, molecular dynamics simulation studies, and ADMET predictions

AH Hasan, NH Hussen, S Shakya, J Jamalis… - Structural Chemistry, 2022 - Springer
Abstract Coronavirus disease-2019 (COVID-19), a global pandemic, has currently infected
more than 247 million people around the world. Nowadays, several receptors of COVID-19 …

Molecular docking studies of some selected gallic acid derivatives against five non-structural proteins of novel coronavirus

HI Umar, B Siraj, A Ajayi, TO Jimoh… - Journal of Genetic …, 2021 - Elsevier
Abstract Background The World Health Organization has recently declared a new
coronavirus disease (COVID-19) a pandemic and a global health emergency. The pressure …

Antimicrobial potentials of Pandanus amaryllifolius Roxb.: Phytochemical profiling, antioxidant, and molecular docking studies

DK Wahyuni, GA Nuha, TG Atere, VD Kharisma… - Plos one, 2024 - journals.plos.org
The emergence of antimicrobial resistance has led to an urgent need for novel antimicrobial
drugs. This study aimed to determine the antioxidant and antimicrobial potentials in silico …

Screening S protein–ACE2 blockers from natural products: strategies and advances in the discovery of potential inhibitors of COVID-19

H Liu, X Liu, X Yuan, C Xu, F Wang, J Lin, R Xu… - European Journal of …, 2021 - Elsevier
Abstract The Coronavirus disease, 2019 (COVID-19) is caused by severe acute respiratory
syndrome Coronavirus 2 (SARS-CoV-2), which poses a major threat to human life and …

Exploration of limonoids for their broad spectrum antiviral potential via DFT, molecular docking and molecular dynamics simulation approach

S Rochlani, M Bhatia, S Rathod… - Natural Product …, 2024 - Taylor & Francis
Limonoids serve as vital secondary metabolites. Citrus limonoids show a wide range of
pharmacological potential. As a result of which limonoids from citrus are of considerable …