Recent advances in magnetic tweezers

I De Vlaminck, C Dekker - Annual review of biophysics, 2012 - annualreviews.org
Since their first demonstration of manipulation and mechanical coiling of a single DNA
molecule, magnetic tweezers have become a popular and widely used single-molecule …

DNA supercoiling during transcription

J Ma, MD Wang - Biophysical reviews, 2016 - Springer
The twin-supercoiled-domain model describes how transcription can drive DNA
supercoiling, and how DNA supercoiling, in turn, plays an important role in regulating gene …

Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1

CP Liu, Z Yu, J Xiong, J Hu, A Song, D Ding, C Yu… - Science, 2023 - science.org
Chromatin inheritance entails de novo nucleosome assembly after DNA replication by
chromatin assembly factor-1 (CAF-1). Yet direct knowledge about CAF-1's histone binding …

Acoustofluidic holography for micro-to nanoscale particle manipulation

Y Gu, C Chen, J Rufo, C Shen, Z Wang, PH Huang… - ACS …, 2020 - ACS Publications
Acoustic-based techniques can manipulate particles in a label-free, contact-free, and
biocompatible manner. However, most previous work in acoustic manipulation has been …

Directional R-loop formation by the CRISPR-Cas surveillance complex cascade provides efficient off-target site rejection

M Rutkauskas, T Sinkunas, I Songailiene… - Cell reports, 2015 - cell.com
CRISPR-Cas systems provide bacteria and archaea with adaptive immunity against foreign
nucleic acids. In type I CRISPR-Cas systems, invading DNA is detected by a large …

Storage of mechanical energy in DNA nanorobotics using molecular torsion springs

M Vogt, M Langecker, M Gouder, E Kopperger… - Nature Physics, 2023 - nature.com
DNA nanostructures are increasingly used for the realization of mechanically active
nanodevices and DNA-based nanorobots. A fundamental challenge in this context is the …

A guide to magnetic tweezers and their applications

R Sarkar, VV Rybenkov - Frontiers in Physics, 2016 - frontiersin.org
Magnetic force spectroscopy is a rapidly developing single molecule technique that has
found numerous applications at the interface of physics and biology. Since the invention of …

Rotation tracking of genome-processing enzymes using DNA origami rotors

P Kosuri, BD Altheimer, M Dai, P Yin, X Zhuang - Nature, 2019 - nature.com
Many genome-processing reactions, including transcription, replication and repair, generate
DNA rotation. Methods that directly measure DNA rotation, such as rotor bead tracking …

Single-molecule analysis and engineering of DNA motors

S Mohapatra, CT Lin, XA Feng, A Basu, T Ha - Chemical reviews, 2019 - ACS Publications
Molecular motors are diverse enzymes that transduce chemical energy into mechanical
work and, in doing so, perform critical cellular functions such as DNA replication and …

Twist response of actin filaments

JP Bibeau, NG Pandit, S Gray… - Proceedings of the …, 2023 - National Acad Sciences
Actin cytoskeleton force generation, sensing, and adaptation are dictated by the bending
and twisting mechanics of filaments. Here, we use magnetic tweezers and microfluidics to …