Detecting epistasis in human complex traits

WH Wei, G Hemani, CS Haley - Nature Reviews Genetics, 2014 - nature.com
Genome-wide association studies (GWASs) have become the focus of the statistical analysis
of complex traits in humans, successfully shedding light on several aspects of genetic …

[HTML][HTML] Strategies and principles of distributed machine learning on big data

EP Xing, Q Ho, P Xie, D Wei - Engineering, 2016 - Elsevier
The rise of big data has led to new demands for machine learning (ML) systems to learn
complex models, with millions to billions of parameters, that promise adequate capacity to …

A survey towards an integration of big data analytics to big insights for value-creation

MK Saggi, S Jain - Information Processing & Management, 2018 - Elsevier
Abstract Big Data Analytics (BDA) is increasingly becoming a trending practice that
generates an enormous amount of data and provides a new opportunity that is helpful in …

The ocean sampling day consortium

A Kopf, M Bicak, R Kottmann, J Schnetzer, I Kostadinov… - Gigascience, 2015 - Springer
Abstract Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial
Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine …

A deep auto-encoder model for gene expression prediction

R Xie, J Wen, A Quitadamo, J Cheng, X Shi - BMC genomics, 2017 - Springer
Background Gene expression is a key intermediate level that genotypes lead to a particular
trait. Gene expression is affected by various factors including genotypes of genetic variants …

A Lasso multi-marker mixed model for association mapping with population structure correction

B Rakitsch, C Lippert, O Stegle, K Borgwardt - Bioinformatics, 2013 - academic.oup.com
Motivation: Exploring the genetic basis of heritable traits remains one of the central
challenges in biomedical research. In traits with simple Mendelian architectures, single …

Kernel methods for large-scale genomic data analysis

X Wang, EP Xing, DJ Schaid - Briefings in bioinformatics, 2015 - academic.oup.com
Abstract Machine learning, particularly kernel methods, has been demonstrated as a
promising new tool to tackle the challenges imposed by today's explosive data growth in …

Graph-regularized dual Lasso for robust eQTL mapping

W Cheng, X Zhang, Z Guo, Y Shi, W Wang - Bioinformatics, 2014 - academic.oup.com
Motivation: As a promising tool for dissecting the genetic basis of complex traits, expression
quantitative trait loci (eQTL) mapping has attracted increasing research interest. An …

[PDF][PDF] Prediction of single-cell gene expression for transcription factor analysis

F Behjati Ardakani, K Kattler, T Heinen, F Schmidt… - …, 2020 - academic.oup.com
Background Single-cell RNA sequencing is a powerful technology to discover new cell types
and study biological processes in complex biological samples. A current challenge is to …

An integrated network of microRNA and gene expression in ovarian cancer

A Quitadamo, L Tian, B Hall, X Shi - BMC bioinformatics, 2015 - Springer
Background Ovarian cancer is a deadly female reproductive cancer. Understanding the
biological mechanisms underlying ovarian cancer could help lead to quicker and more …