Systems and methods for dynamic display of hierarchical data (eg, a tree) are provided.
Dynamic display enables a user to navigate the hierarchical data by dragging, without …

Visual analysis of relational information is vital in most real-life analytics applications.
Automatic layout is a key requirement for effective visual display of such information. This …

Background Information about cellular processes and pathways is becoming increasingly
available in detailed, computable standard formats such as BioPAX and SBGN. Effective …

Background One common problem in visualizing real-life networks, including biological
pathways, is the large size of these networks. Often times, users find themselves facing slow …

We present a new algorithm for automatic layout of clustered graphs using a circular style.
The algorithm tries to determine optimal location and orientation of individual clusters …

Background Biological pathways represent chains of molecular interactions in biological
systems that jointly form complex dynamic networks. The network structure changes from the …

Motivation: Evolving technology has increased the focus on genomics. The combination of
today's advanced techniques with decades of molecular biology research has yielded huge …

This paper describes a new automatic layout algorithm named CoSEP for compound graphs
with port constraints. The algorithm works by extending the physical model of a previous …

The concept of multilayer networks has become recently integrated into complex systems
modeling since it encapsulates a very general concept of complex relationships. Biological …

When it comes to comprehension of complex phenomena, humans need to understand what
interactions lie within them. These interactions are often captured with complex networks …